Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0211 ATGGTCCTGGGTATCGCTGCTATTGCTCTGTTGGCTACCGAGGGCCCCAATGGCTGCTATGATGTTGACGAGTGTGAAGATCCAAAACTCAACGACTGCACCGACCGCTGTACTAACACTATAGGAGGTTACAATTGCTCTTGCCCATGGGGTCACCATGGGCATGGGAGAGGCAAAGATGGTTGCACCGCGGATCAATTGCTATTCATTAAGATTACTATTGGTGTAGGCGTCGGTCTTATAGTATTGTTGACAAGTAGCTCATGGTTGTACTGGATACTCAAGAAAAGGAAGTTTCTCAAAGTCAAAGAAAAGTATTTTCGACAAAATGGTGGTTTGATTTTAGAACAACAACTTTCTAAACGAGAAGGATCCAACGAAAGAAGCAAGATTTTTACAGCAGAAGAGCTTGAAAAAGCCACCAACAAATATAATGAAAGCAAAATCATTGGTCGAGGAGGATTCGGTATTGTTTACAAAGGAATTTTAAGTGACGGTAGAGTGGTTGCTATCAAGAAGTCAAAGATGGTGGATCAAAGCCAAGTTGGGCAATTCATAAATGAGGTAGTTGTTCTATCCCAAATCAATCATAGAAACATAGTCAAGCTCCTAGGTTGTTGCTTGGAGACAGAAGTTCCTTTACTTGTTTATGAATTTGTTACAAATGGCACATTGTTTGACTACATACACAAAGAAAACAAAGTGTCTCCCATTTCATGGGAAACACGTATAAGAATTGCTGCAGAAACTGCTGGAGTGTTATCATATTTACATTCAGCAGCATCTCCACCAATTATCCATAGGGATATTAAATCTAATAATATTCTTTTGGACGACAATTATACTGCAAAGTGTCCGATTTTGGAACTTCAAGATTAG 879 0.397 MVLGIAAIALLATEGPNGCYDVDECEDPKLNDCTDRCTNTIGGYNCSCPWGHHGHGRGKDGCTADQLLFIKITIGVGVGLIVLLTSSSWLYWILKKRKFLKVKEKYFRQNGGLILEQQLSKREGSNERSKIFTAEELEKATNKYNESKIIGRGGFGIVYKGILSDGRVVAIKKSKMVDQSQVGQFINEVVVLSQINHRNIVKLLGCCLETEVPLLVYEFVTNGTLFDYIHKENKVSPISWETRIRIAAETAGVLSYLHSAASPPIIHRDIKSNNILLDDNYTAKCPILELQD* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0211 292 CDD EGF_CA 21 55 - -
Vvi18g0211 292 Gene3D Phosphorylase Kinase; domain 1 110 219 - -
Vvi18g0211 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vvi18g0211 292 Pfam Protein kinase domain 144 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0211 292 SMART serkin_6 144 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0211 292 SUPERFAMILY EGF/Laminin 20 58 - -
Vvi18g0211 292 Pfam Calcium-binding EGF domain 21 56 IPR001881 GO:0005509
Vvi18g0211 292 SUPERFAMILY Protein kinase-like (PK-like) 127 284 IPR011009 -
Vvi18g0211 292 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Vvi18g0211 292 ProSiteProfiles Protein kinase domain profile. 144 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0211 292 FunFam Wall-associated receptor kinase 2 114 219 - -
Vvi18g0211 292 Gene3D Transferase(Phosphotransferase) domain 1 220 285 - -
Vvi18g0211 292 ProSitePatterns Calcium-binding EGF-like domain signature. 21 46 IPR018097 GO:0005509
Vvi18g0211 292 Gene3D Laminin 9 57 - -
Vvi18g0211 292 SMART egfca_6 21 63 IPR001881 GO:0005509
Vvi18g0211 292 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 284 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0211 Vvi-Chr18 1877900 1880143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0211 17 284 Receptor kinase-like Gene Family AT1G21230 50.182 5.77e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi18g0211 Pkinase 4.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0211 - - vvi:100259095 571.237