Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0205 ATGCTTGGACTAGTGATGCATATCAGGCCACAGGATGCTACAATCTTCTCTGTTCAGGTTTTATTCAAATCAACAGTGACTAGATTGGGTGGCTATGACAAGGTGACTTCATGCAAACTGTGGCGGCAAGTGGGAGAGTCCTTTAAATCTCCAAAGACATGTACTACTGTTTCATGGCATGGGAGGATATATCTCATCACAAGAGCACAGAATGTTATCGATGAGTTCTTCCAGCCAGTAGAGCCAACTTTAGGGCAAATAGTTAGGCAGAAATTGAGTGAAGGAAGGAAGGTAACATGCCGGTTACTTGGTGTGATCCTTGAGGGAAGCAGTCCAAAAGAGCTTCAGGCGAAACAAGCAACTGTGAGATCCTCTGTGCCGGAAGTGTTGTTGGAGATAACAAAGTTTTGTGATCTTTATCTCATGGAAAGAGTTCTGGATGATGAAAGTGAAAGAAAGGTGTTTCTGGCTTTAGAAGATGCTGGGGTTTTCACATCTGGTGACTTGGTCCAAGGCAAGGTTCTTTTTTTTGTAGCACAGAGAATGGGCGGTCATCCTTTGTTCGGCAACTTAAACCAGATTGGTATATTGACATAA 597 0.4322 MLGLVMHIRPQDATIFSVQVLFKSTVTRLGGYDKVTSCKLWRQVGESFKSPKTCTTVSWHGRIYLITRAQNVIDEFFQPVEPTLGQIVRQKLSEGRKVTCRLLGVILEGSSPKELQAKQATVRSSVPEVLLEITKFCDLYLMERVLDDESERKVFLALEDAGVFTSGDLVQGKVLFFVAQRMGGHPLFGNLNQIGILT* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0205 198 PANTHER PEROXISOME BIOGENESIS PROTEIN 22 67 177 IPR037485 GO:0007031
Vvi18g0205 198 Gene3D - 19 72 IPR036431 GO:0003677
Vvi18g0205 198 SUPERFAMILY ARID-like 24 60 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0205 Vvi-Chr18 1824485 1825384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0205 25 64 ARID Transcription Factor Family AT1G76510 72.500 1.59e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0205 - - vvi:100267138 193.356