Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0197 ATGGCGAAAAATCTGCTTCATGCTTTAGCAATGGTGCGCGTAATTTGCTATTTTTTCTCGAATGTTAATGCCTTTACTGCTTCTGGGTGGACTAAAGCTCACGCTACGTTTTATGGAGGCAGTGATGCCTCTGGGACAATGGGAGGGGCTTGTGGATATGGAAACTTGTACTCTACTGGATATGGAACAAGAACGGCAGCTTTGAGCACAGCATTGTTCAATGATGGGGCTTCATGTGGGCAATGCTACAAGATCATATGTGATTACCAATCCGATTCACAGTGGTGCAAGAAAGGAGCTTCTGTGACCATCACTGCAACAAACTTTTGCCCTCCAAACTATGCTCTTCCAAGCAACAATGGAGGGTGGTGCAACCCACCCCTGCAGCATTTCGATATGGCTCAGCCAGCATGGGAAAAGATCGGTATTTACAGAGGCGGGATCGTCCCAGTGCTGTTCCAAAGGGTTCCATGTAAGAAGCATGGTGGTGTTAGATTCAGTGTTAATGGAAGAGACTACTTCGAATTAGTATTGATAAGCAATGTAGCTGGGGCTGGATCTATTCAATCAGTATCAATCAAAGGCTCCCGGACCAGTTGGATGGCCATGTCCAGGAACTGGGGAGCTAACTGGCAGTCTAATGCCTATCTCAATGGCCAGTCTCTGTCCTTCAAGGTCACCACCACTGATGGAGTGACCCAAGAATTCGACAATGTTGTGCCTTCAGATTGGGGGTTTGGTCAGACCTTCTCTAGCTCAGTACAGTTTTAA 771 0.4682 MAKNLLHALAMVRVICYFFSNVNAFTASGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYKIICDYQSDSQWCKKGASVTITATNFCPPNYALPSNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNVAGAGSIQSVSIKGSRTSWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGVTQEFDNVVPSDWGFGQTFSSSVQF* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0197 256 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Vvi18g0197 256 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Vvi18g0197 256 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Vvi18g0197 256 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Vvi18g0197 256 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Vvi18g0197 256 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Vvi18g0197 256 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Vvi18g0197 256 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Vvi18g0197 256 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Vvi18g0197 256 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Vvi18g0197 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Vvi18g0197 256 SMART dpbb_1 65 153 IPR007112 -
Vvi18g0197 256 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Vvi18g0197 256 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Vvi18g0197 256 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Vvi18g0197 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Vvi18g0197 256 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Vvi18g0197 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Vvi18g0197 256 Pfam Lytic transglycolase 65 152 IPR009009 -
Vvi18g0197 256 FunFam Expansin 163 256 - -
Vvi18g0197 256 SUPERFAMILY Barwin-like endoglucanases 20 181 IPR036908 -
Vvi18g0197 256 FunFam Expansin 19 159 - -
Vvi18g0197 256 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Vvi18g0197 256 Gene3D - 17 159 IPR036908 -
Vvi18g0197 256 Gene3D - 163 256 IPR036749 -
Vvi18g0197 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Vvi18g0197 256 PANTHER EXPANSIN-A15 9 252 IPR002963 GO:0009664
Vvi18g0197 256 CDD DPBB_EXPA_N 29 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0197 Vvi-Chr18 1779003 1779933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0197 18 256 Expansin Gene Family AT4G01630 67.083 1.13e-118 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0197 - - vvi:100245385 542.732