Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0190 ATGAGCGTCGTCTTCGTGGTCTACATCTGCCTCTTGTGGTACTCCGCCCTGGGCCAGCAGCCGGAGTTGCCAGCGCCGGTCAAGCCGGAGTCTGAGAAGGGACTCTCGGCGTCGGACCTCGACAAACTGCCCAAACTCGCTGGAAAGGATCTCGTCGTGGGAGCGGAGTGCGCGGTATGCTTGGACGAAATAGAGAGTGACGCACCGGCCAGATTAATTCCCGGTTGCAATCATGGCTTCCATCTCCAGTGCGCCGATACTTGGCTCTCCAAGCACTCGGTTTGCCCTCTTTGTAGAGCCATTCTCGCGCCTGAGTTTTTCAACACCTCTGAAAATCCCTGCTAA 345 0.571 MSVVFVVYICLLWYSALGQQPELPAPVKPESEKGLSASDLDKLPKLAGKDLVVGAECAVCLDEIESDAPARLIPGCNHGFHLQCADTWLSKHSVCPLCRAILAPEFFNTSENPC* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0190 114 SUPERFAMILY RING/U-box 56 105 - -
Vvi18g0190 114 SMART ring_2 57 98 IPR001841 -
Vvi18g0190 114 Pfam Ring finger domain 56 99 IPR001841 -
Vvi18g0190 114 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 104 IPR013083 -
Vvi18g0190 114 FunFam E3 ubiquitin-protein ligase ATL23 25 105 - -
Vvi18g0190 114 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 109 - -
Vvi18g0190 114 ProSiteProfiles Zinc finger RING-type profile. 57 99 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0190 Vvi-Chr18 1727515 1727859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0190 1 114 C3H Transcription Factor Family AT5G42200 54.545 5.72e-39 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0190 K19037 - vvi:100267702 242.662