Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0189 ATGAATGTAACCGTCACAGCTATTGAAGCGGTTCTTCTACTCTGCGCTGGAATGACCGCGCTTTTTGTCCTCTACTTCGTCGTCTTCTGGTGCTTCGCCTTCCCCAACCAGTCCGAGTTGCGGCGGCAGGAGAAGTCGAGGGCGGATGAGGGACTGTCGACGTCGGAGCTTGAGAGACTGCCGAAACTTGCCGGAAAAGATATGACGGTGACGGGCATGGAGTGTGCGGTATGCTTGGAGGAGATCGAAGGTGACGAACTGGCCAGAGTGGTCCCGGCTTGCAATCACGCCTTTCATCTAGAATGCGCCGATACTTGGCTGTCTAAGCACTCGGTTTGTCCTCTTTGCCGAGCTCCAATCAGGCCTGAGTTTCATTACACATCTGAAAATCTCTGCTGA 399 0.5388 MNVTVTAIEAVLLLCAGMTALFVLYFVVFWCFAFPNQSELRRQEKSRADEGLSTSELERLPKLAGKDMTVTGMECAVCLEEIEGDELARVVPACNHAFHLECADTWLSKHSVCPLCRAPIRPEFHYTSENLC* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0189 132 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Vvi18g0189 132 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 126 - -
Vvi18g0189 132 SUPERFAMILY RING/U-box 74 124 - -
Vvi18g0189 132 FunFam E3 ubiquitin-protein ligase ATL23 42 123 - -
Vvi18g0189 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 123 IPR013083 -
Vvi18g0189 132 Pfam Ring finger domain 74 117 IPR001841 -
Vvi18g0189 132 SMART ring_2 75 116 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0189 Vvi-Chr18 1721216 1721614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0189 6 130 C3H Transcription Factor Family AT5G42200 46.512 5.93e-36 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0189 K19037 - vvi:104882588 230.335