Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0187 ATGTGTTATCGGGAATTCGAAAGATCGGAAGAAAAGAGTTTGAACATGGGAGAGGCACAAAACATGCCAGATATGGAGGAAGGATCTCTACTCGTTGGAATGGAGTATAGAACTGTTTCTGGTGTAGCAGGGCCACTCGTTATTCTTGAGAAAGTCAAGGGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAGGTTTTTGAAGGCACTTCTGGAATTGACAACAAATACACAACCGTGCAATTTACTGGGGAGGTTTTGAAAACACCTGTATCACTGGATATGCTTGGCCGCATTTTTAATGGTTCTGGAAAACCCATTGATAATGGCCCCCCAATTCTGCCAGAGGCTTACCTAGATATTTCTGGAAGTTCTATCAACCCCAGTGAGAGAACCTATCCTGAAGAGATGATACAAACAGGGATTTCTACTATTGATGTCATGAACTCCATTGCTCGAGGTCAAAAGATCCCTCTTTTTTCTGCTGCTGGTCTTCCTCATAATGAAATAGCTGCACAAATCTGTCGTCAGGCTGGTCTTGTAAAGCGGTTGGAAAAATCTGGAAATCTCCTAGAGGATGAGGTAGAGGACAATTTCGCCATCGTCTTTGCTGCTATGGGAGTAAACATGGAAACAGCACAATTTTTTAAGCGTGATTTTGAGGAAAATGGATCCATGGAGAGAGTGACCCTTTTCCTAAACTTGGCCAATGATCCCACCATAGAACGCATTATCACTCCTCGAATTGCTCTCACAACTGCAGAATATTTGGCTTATGAGTGTGGGAAGCATGTTCTAGTTATATTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGGTATCTGCAGCCCGGGAGGAAGTACCTGGAAGGCGTGGGTATCCTGGGTATATGTATACTGATCTTGCAACAATTTATGAGCGTGCTGGACGTATAGAAGGGCGAAAAGGCTCCATCACACAAATTCCTATTTTAACCATGCCTAATGATGATATTACGCATCCAACTCCAGATCTTACTGGTTATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAGATATACCCACCTATTAATGTTCTTCCATCACTCTCTCGACTAATGAAGAGTGCCATTGGTGAGGGAATGACTCGTCGAGACCATGCTGATGTGTCCAACCAGCTATATGCGAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAGGAAGCACTCTCTTCTGAGGATCTGCTTTATCTGGAGTTCCTAGACAAATTCGAGAGGAAATTTGTGGCTCAAGGGGCTTATGATACCCGCAACATCTTCCAGTCACTAGATTTGGCGTGGACATTACTCCGCATCTTCCCCCGTGAGCTTCTCCACCGTATACCTGCAAAGACACTGGACCAGTACTACAGTCGTGATGCAGCAAACTGA 1512 0.4438 MCYREFERSEEKSLNMGEAQNMPDMEEGSLLVGMEYRTVSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSGNLLEDEVEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQYYSRDAAN* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0187 503 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 20 501 IPR022879 -
Vvi18g0187 503 Gene3D - 44 503 - -
Vvi18g0187 503 Hamap V-type ATP synthase beta chain [atpB]. 33 501 IPR022879 -
Vvi18g0187 503 NCBIfam V-type ATPase subunit B 35 502 IPR005723 GO:0033180|GO:0046961|GO:1902600
Vvi18g0187 503 CDD ATP-synt_V_A-type_beta_C 402 496 - -
Vvi18g0187 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 398 IPR027417 -
Vvi18g0187 503 Pfam ATP synthase alpha/beta family, beta-barrel domain 39 105 IPR004100 GO:0046034|GO:1902600
Vvi18g0187 503 FunFam V-type proton ATPase subunit B, brain 44 503 - -
Vvi18g0187 503 CDD ATP-synt_V_A-type_beta_N 35 106 - -
Vvi18g0187 503 CDD V_A-ATPase_B 107 400 - -
Vvi18g0187 503 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 162 392 IPR000194 GO:0005524
Vvi18g0187 503 PIRSF V-ATPsynth_beta/V-ATPase_B 27 503 IPR022879 -
Vvi18g0187 503 ProSitePatterns ATP synthase alpha and beta subunits signature. 383 392 IPR020003 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0187 Vvi-Chr18 1699118 1705800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0187 16 503 Primary Pumps ATPases(2) AT4G38510 96.311 0.0 962
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0187 K02147 - vvi:100257413 964.14