Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0186 ATGGGTTTCTGCTTCTCCAGACCTCGTGATATCCCAATCTCTTCTTCTTCCTCCTCTGATGGTGATTTTACTAATCATCACTACCAACCCATACCCATTTCTTCCTCCAAAGAGTCATTGGACATCCCACCTCCTCTTTCAATGTCTGTGCCTAAACCACCCACATCTTCACAAATTGGAACCGTTCTAGGCAGACCATTATGTGAAATAACCTCGATTTATGATATTGGTAAAGAACTGGGGAGGGGTCAGTTTGGGATCACCTATCTCTGTACTGAGAAGTCCACTGGTTTGAAGTACGCTTGTAAGTCAATATCCAAGCGGAAGCTTAAGAGTGGGAAGGATATTGAGGATGTTAAGAGGGAGATTTTGATTCTAGAGCACCTCACTGGACAACCCAATATAGTAGAGTTCAAGGGTGCTTATGAGGACAAGCAGAATCTGCATTTAGTGATGGAGTTGTGTTCTGGGGGTGAGCTTTTTGATCGGATTACAGCGAAAGGTAGTTATTCCGAGCGAGAAGCGGCAGATATCTGTAGACAGATTGTGACCGTGGTTCATGTTTGTCATTTTATGGGAGTGATGCATAGGGACTTGAAGCCTGAGAATTTCTTGATGGTGAGCCGGGAGGAGAATTCCCCGTTGAAAGCCACAGATTTTGGGCTCTCTGTCTTCATAGAGGACAATGAAGTGTACAAGGATGTTGTTGGAAGTGCATACTATGTGGCTCCAGAGGTGCTGCGACGGAGCTATGGGAAAGAAATTGATGTCTGGAGTGCTGGAGTCATTTTATATATTCTTCTAAGTGGGGTGCCTCCATTTTGGGGTGAGAATGAAAAAAGTATATTTGATGCGGTATTACAAGGCTACGTTGATTTTGACAGTGCACCATGGCCTTCTATATCTAGTTCTGCAAAGGATCTAATAAAAAAAATGTTAATGAAGGACCCTAAAAGACGGATCACTGCTTCTGATGCCCTCAATCATCCATGGCTCAGAGAAGATGGTGAGGCGTCAGACAAACCTATTGATAGTGCTGTTCTAGTTAGGATGAAGCAATTCAGAGCAATGAACAAGTTGAAGAAACTTGCATTAAAGGTAATTGCAGAAAACCTATCAGAAGAAGACATCAAAGGGTTGAAACAAATGTTTAACAACATGGACACTGATAGAAGTGGCACAATCACATTCGAAGAACTCAAAACTGGATTGTCTAGGCTGGGGTCCAAGCTTTCTGAGTTAGAAATAAAGCAGCTGATGGATGCTGTTGATGTTGATCAGAATGGGACTCTTGATTATACTGAATTCATTACTGCCACTATGCAGCGGCACCGACTAGAGAAAGAAGAGAACTTGTTCAAAGCTTTCCAGTTTTTTGACAAGGATGGTAGTGGGTTTATAACAAGAGAGGAGCTGAAGCAAGCCATGACCCAGTATGGAATGGGGGATGAAGCGACTATAGATGAAGTCATCGATGATGTGGATACTGATAAAGATGGGAGAATTAATTATGAGGAGTTTGTGGCCATGATGAAAAAGGGACCACAAGATACCGAGTTGAAGCAGAGATAA 1572 0.4268 MGFCFSRPRDIPISSSSSSDGDFTNHHYQPIPISSSKESLDIPPPLSMSVPKPPTSSQIGTVLGRPLCEITSIYDIGKELGRGQFGITYLCTEKSTGLKYACKSISKRKLKSGKDIEDVKREILILEHLTGQPNIVEFKGAYEDKQNLHLVMELCSGGELFDRITAKGSYSEREAADICRQIVTVVHVCHFMGVMHRDLKPENFLMVSREENSPLKATDFGLSVFIEDNEVYKDVVGSAYYVAPEVLRRSYGKEIDVWSAGVILYILLSGVPPFWGENEKSIFDAVLQGYVDFDSAPWPSISSSAKDLIKKMLMKDPKRRITASDALNHPWLREDGEASDKPIDSAVLVRMKQFRAMNKLKKLALKVIAENLSEEDIKGLKQMFNNMDTDRSGTITFEELKTGLSRLGSKLSELEIKQLMDAVDVDQNGTLDYTEFITATMQRHRLEKEENLFKAFQFFDKDGSGFITREELKQAMTQYGMGDEATIDEVIDDVDTDKDGRINYEEFVAMMKKGPQDTELKQR* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0186 523 ProSiteProfiles EF-hand calcium-binding domain profile. 411 446 IPR002048 GO:0005509
Vvi18g0186 523 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Vvi18g0186 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 507 - -
Vvi18g0186 523 ProSiteProfiles EF-hand calcium-binding domain profile. 447 482 IPR002048 GO:0005509
Vvi18g0186 523 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Vvi18g0186 523 SUPERFAMILY EF-hand 371 516 IPR011992 -
Vvi18g0186 523 ProSiteProfiles EF-hand calcium-binding domain profile. 483 517 IPR002048 GO:0005509
Vvi18g0186 523 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Vvi18g0186 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vvi18g0186 523 ProSiteProfiles Protein kinase domain profile. 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0186 523 ProSitePatterns EF-hand calcium-binding domain. 424 436 IPR018247 -
Vvi18g0186 523 Gene3D - 341 517 - -
Vvi18g0186 523 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Vvi18g0186 523 Pfam EF-hand domain pair 380 440 IPR002048 GO:0005509
Vvi18g0186 523 Pfam EF-hand domain pair 449 512 IPR002048 GO:0005509
Vvi18g0186 523 FunFam Calcium-dependent protein kinase 1 340 515 - -
Vvi18g0186 523 CDD STKc_CAMK 74 331 - -
Vvi18g0186 523 ProSitePatterns EF-hand calcium-binding domain. 460 472 IPR018247 -
Vvi18g0186 523 MobiDBLite consensus disorder prediction 1 59 - -
Vvi18g0186 523 FunFam Calcium-dependent protein kinase 1 76 159 - -
Vvi18g0186 523 SUPERFAMILY Protein kinase-like (PK-like) 56 353 IPR011009 -
Vvi18g0186 523 SMART efh_1 415 443 IPR002048 GO:0005509
Vvi18g0186 523 SMART efh_1 451 479 IPR002048 GO:0005509
Vvi18g0186 523 SMART efh_1 486 514 IPR002048 GO:0005509
Vvi18g0186 523 SMART efh_1 379 407 IPR002048 GO:0005509
Vvi18g0186 523 Gene3D Transferase(Phosphotransferase) domain 1 160 340 - -
Vvi18g0186 523 Pfam Protein kinase domain 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0186 523 SMART serkin_6 74 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0186 523 FunFam calcium-dependent protein kinase 1 160 339 - -
Vvi18g0186 523 Gene3D Phosphorylase Kinase; domain 1 76 159 - -
Vvi18g0186 523 MobiDBLite consensus disorder prediction 10 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0186 Vvi-Chr18 1691095 1697042 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0186 53 519 EF-hand Containing Proteins AT3G20410 70.726 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi18g0186 Pkinase 2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0186 K13412 - vvi:100260943 996.882