Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0185 ATGTGTATAGGTCTAAGGGTAAGCAAAATGTACAGGGATGTTGTTGGAAGTGCAAATTATGTGGCTCCAGAGGTGTTGCGGCGGAACAATGGAAAAGAGATTGATGTCTGGAGTGCTGGAGTCATTTTATATGTTCTTCTAAGTGGGACACCTCCATTTTGGGGTGAGATGAAAAAAGTATATTTGATGCAATATTGCAAGGCTACATTGACTTTGAAAGTGCACCATGGCCTTCTACATCTGCTTCTGCAAAGGATCTAA 261 0.4138 MCIGLRVSKMYRDVVGSANYVAPEVLRRNNGKEIDVWSAGVILYVLLSGTPPFWGEMKKVYLMQYCKATLTLKVHHGLLHLLLQRI* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0185 86 Gene3D Transferase(Phosphotransferase) domain 1 4 85 - -
Vvi18g0185 86 ProSiteProfiles Protein kinase domain profile. 1 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0185 86 PANTHER SERINE/THREONINE-PROTEIN KINASE 7 63 - -
Vvi18g0185 86 SUPERFAMILY Protein kinase-like (PK-like) 8 73 IPR011009 -
Vvi18g0185 86 Pfam Protein kinase domain 9 64 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0185 Vvi-Chr18 1684706 1687018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0185 7 73 EF-hand Containing Proteins AT1G76040 65.672 8.82e-27 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi18g0185 Pkinase 8.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0185 K13412 - vvi:104882456 125.176