Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0172 ATGTCGGAGAAACCAAAGACGCGTTCAACGGAAATCGCTGGTTTCTCCTGTCATAGCCAAGGCTACGAATCTGCATCTGCCTCCTCTGAATTCTTAACAATGGCGGATGATTCTGAAACCATAGTGTATCTTCACGGTGATTTAGATTTGAACATTATTGAAGCTCGATACTTGCCGAATATGGATTTGATGTCTGAGCGTATTCGGCGGTGCTTCACGGCTTTCGACTCGTGCCGGGCTCCGTTCTCCGGTGGAAGGAAGAAAGGGCGCCACCACAAGATCATTACCAGCGATCCTTATGTCACCGTCTGCCTGGCCGGAGCGACGGTGGCGCGGACTCGCGTCATCTCCAATTCTCAGCACCCTGTGTGGAACGAACACCTTAAAATCCCTCTGGCTCACCCGGTCTCCTGCGTCGAGTTCCAGGTGAAAGACAACGATGTATTCGGCGCTGACATGATTGGAACCGCTACCGTGTCTGCGGAAAGAATCAGAACCGGTGATTCGATCTCCGATTGGTTTCCGATACTCGGATTCAACGGCAAACCGCCGAAGCCTGATTCTGCTATTTATTTAAAAATGAGATTTATTTCTTCCGAGATCAATCCTCTGTATACTCGCGGTATCACCGATCCAGACCATTTTGGCGTTAAACAGAGTTATTTCCCGGTGCGGCTAGGCGGCTCTGTGACTCTTTACCAGGACGCGCATGTTCCCAACGGTATGCTTCCTGAGCTTGAGTTGGATGATGGAGTGGTGTATCAACACGGGAAATGCTGGGAAGACATTTGCCACTCAATCCTGGAGGCTCATCATTTGGTCTATATTGTGGGTTGGTCAGTGTACCATAAGGTGAAGCTAGTTCGAGAACCGACTAGGCCTTTACCTAGTGGTGGCAATTTGAATCTTGGCGAGTTGCTCAAGTATAAATCTCAAGAAGGGGTGAGAGTTTTGTTGTTGGTTTGGGATGATAAGACTTCCCACAGCAGATTCTTGGTTAATACGGTAGGAGTGATGCAAACTCATGACGAGGAAACTCGGAAGTTTTTCAAGCACTCTTCTGTTCTTTGTGTGCTGTCACCTCGTTATGCCAGCAGTAAGCTTAGCATTTTCAAGCAACAGGTCGTTGGCACGCTCTTTACACACCATCAAAAATGTGTGATTGTGGATACACAAGCATCTGGAAATAACCGGAAGATAACTGCCTTTCTAGGAGGTTTAGACCTTTGTGATGGCCGCTATGATACACCCGAACATCGTTTGTGTCATGATCTTGACACTGTATTTCAGAATGATTATCACAATCCAACATTTTCTGCAGTAAGTAAGGGTCCAAGGCAACCATGGCACGATTTGCATTGCAAAATTGAGGGGCCTGCTGCATATGACGTGCTTACAAACTTTGAGCAGCGTTGGCGAAAAGCCACAAAATGGTCAGAGTTTGGGCGACGTTTCAAAAGGATAACTCATTGGCATGAAGATGCCTTAATCAAGTTAGAGCGCATCTCATGGATACTTAGCCCTTCCCCATCTGTTCCATATGATGATCCTAGCTTATGGGTTTCTGAAGAAAATGATCCTGAAAATTGGCATGTTCAGGTCTTTAGATCTATAGATTCAGGATCTTTGAGAGGATTTCCCAAAGATGTTCCTTCAGCTGAGGCTCAGAACCTAGTCTGTGCAAAAAACTTGGTGATAGACAAGAGCATTCAAACAGCATACATCCAGGCAATCAGATCTGCCCAACACTTCATCTATATTGAGAATCAGTATTTTATTGGATCTTCTTATGCGTGGCCATCTTATAAAAACGCAGGAGCTGATAATCTGATTCCGATGGAGTTGGCACTAAAGATTGCTAGTAAGATAAGAGCAAAGGAGAGATTTTCAGTTTATGTTGTCATACCAATGTGGCCTGAGGGCAACCCCTCCTGTGCCTCTGTGCAAGAAATTTTGTTTTGGCAGGGGCAAACAATGCAAATGATGTATGATATTATAGCACAAGAGCTGCAATCCATGCAACTTGAGGATGCACACCCACAAGACTACCTCAATTTCTACTGTCTTGGTAATCGGGAAGAACCACCCAAAGAAGTGTCAAGTTCAAACACACAAGCCTCTGACGGGGTTTCCACTTCAAAGAAGTTTCATCGATTTATGATTTATGTACATGCCAAGGGAATGATAGTAGATGATGAGTATGTGATATTGGGGTCTGCCAATATTAACCAAAGATCTATGGCTGGTTCAAGAGACACTGAGATAGCTATGGGTGCATATCAGCCTCGCCACACTTGGGCCAAGAAGAAGAAACATCCACATGGCCAGATATACGGGTACAGAATGTCCTTGTGGGCAGAGCACCTAGGGATGATAAATAATAGTTTCAAGGAGCCTCAAACCTTGGATTGTGTGAAGAATGTGAACAAGATGGCTGAAGAGAACTGGAAGAGGTTCACAAGTGATGCTTACACCCCATTGCAAGGCCACCTTCTTAAATATCCCATCCAGGTAGATGTTGACGGGAAGGTAAGACCCTTGCCCGGACATGAGACTTTTCCTGACTTTGGTGGTAAGGTGCTTGGTACTCGATGTAATCTTCCAGATGCTCTAACTACATAG 2622 0.4542 MSEKPKTRSTEIAGFSCHSQGYESASASSEFLTMADDSETIVYLHGDLDLNIIEARYLPNMDLMSERIRRCFTAFDSCRAPFSGGRKKGRHHKIITSDPYVTVCLAGATVARTRVISNSQHPVWNEHLKIPLAHPVSCVEFQVKDNDVFGADMIGTATVSAERIRTGDSISDWFPILGFNGKPPKPDSAIYLKMRFISSEINPLYTRGITDPDHFGVKQSYFPVRLGGSVTLYQDAHVPNGMLPELELDDGVVYQHGKCWEDICHSILEAHHLVYIVGWSVYHKVKLVREPTRPLPSGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSRFLVNTVGVMQTHDEETRKFFKHSSVLCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNNRKITAFLGGLDLCDGRYDTPEHRLCHDLDTVFQNDYHNPTFSAVSKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSEFGRRFKRITHWHEDALIKLERISWILSPSPSVPYDDPSLWVSEENDPENWHVQVFRSIDSGSLRGFPKDVPSAEAQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFIGSSYAWPSYKNAGADNLIPMELALKIASKIRAKERFSVYVVIPMWPEGNPSCASVQEILFWQGQTMQMMYDIIAQELQSMQLEDAHPQDYLNFYCLGNREEPPKEVSSSNTQASDGVSTSKKFHRFMIYVHAKGMIVDDEYVILGSANINQRSMAGSRDTEIAMGAYQPRHTWAKKKKHPHGQIYGYRMSLWAEHLGMINNSFKEPQTLDCVKNVNKMAEENWKRFTSDAYTPLQGHLLKYPIQVDVDGKVRPLPGHETFPDFGGKVLGTRCNLPDALTT* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0172 873 FunFam Phospholipase D delta 250 494 - -
Vvi18g0172 873 Pfam PLD-like domain 575 756 IPR025202 -
Vvi18g0172 873 Gene3D Endonuclease Chain A 252 492 - -
Vvi18g0172 873 ProSiteProfiles C2 domain profile. 28 174 IPR000008 -
Vvi18g0172 873 Pfam Phospholipase D Active site motif 379 413 IPR001736 GO:0003824
Vvi18g0172 873 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 378 413 IPR001736 GO:0003824
Vvi18g0172 873 SUPERFAMILY Phospholipase D/nuclease 551 801 - -
Vvi18g0172 873 CDD C2_plant_PLD 42 197 - -
Vvi18g0172 873 Pfam C2 domain 46 176 IPR000008 -
Vvi18g0172 873 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 719 746 IPR001736 GO:0003824
Vvi18g0172 873 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 44 198 IPR035892 -
Vvi18g0172 873 Gene3D Endonuclease Chain A 544 771 - -
Vvi18g0172 873 Gene3D C2 domain 45 204 IPR035892 -
Vvi18g0172 873 Pfam Phospholipase D C terminal 794 863 IPR024632 -
Vvi18g0172 873 PANTHER PHOSPHOLIPASE D 38 863 IPR015679 -
Vvi18g0172 873 SMART pld_4 378 413 IPR001736 GO:0003824
Vvi18g0172 873 SMART pld_4 719 746 IPR001736 GO:0003824
Vvi18g0172 873 PIRSF PLD_plant 33 873 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vvi18g0172 873 SMART C2_3c 47 173 IPR000008 -
Vvi18g0172 873 SUPERFAMILY Phospholipase D/nuclease 215 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0172 Vvi-Chr18 1536671 1544502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0172 38 703 Phospholipase D Gene Family (Wang group) AT4G35790 66.812 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0172 K01115 - vvi:100241982 1805.8