Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0168 ATGGAGGATGCAGACAGTTGCAGTAGCAGGGCAGTGGATTCATGGCCGACGCACAATCGGAAGCAGAGGCAGAAGGTTGTTGAAATTTATGAAGAGGTTCGTCGTAGACTCAAGAGTTGGGACAATGAAGAGGCGATGCGTCCGGGTTTTGATGATGAACTTTGGGCACACTTCTCTCGACTTCCGACTAGGTATGCGCTTGATGTAAATGTAGAGAGGGCCGAAGATGTTCTTACACACAAGAGACTACTACAATTGGCACATGATCCAGCCACTAGACCAGCACTTGAAGTCCGCCTTGTGCAGGTCCATCCCATTTCTGGTGGAATTCATGGTGATTCTGATCCTTCAAACCCTTTAAAAAAGGTGGATGCTCAAAGTCATTATCACACCAGTCAGAGGAGCACTCATCCACCATCTACCTTTGGATTGTTGCCTAATATGAAAGTTTTGGTTGAAGCCAAAAATTCACATGTTCAAGATGGAGAAGGTGATGTGGATGCCAATCTACGCTTTTGGAGGCTGATGCATGAAGTTATAATTTCAACAAATGACAAGCCCAAGCTCCTCAGTCAGTTGACCTCATTACTTTCTGATATTGGATTGAACATTCAAGAAGCACATGCTTTTTCCACGACAGATGGCTACTCCTTGGATGTTTTTGTTGTTGAGGGCTGGGCACATGAGGAAACTGAGCAGCTTAGAAATGTACTGCTAAAGGAAATTCAAATGATTGAGAAGCAACCTTGGTCAGAATTCCAGCTCATATCTCCTGGGAGGGAGCAAGGACACCCTGAAAAACAGCTTATCCCTAGTCACATAAACTTAACCATTGATGGGGCTGATGTCTGGGAAATTGATGCCACGCTGTTGAAATTTGAAAACAAAATTGCATCTGGATCGTATGGTGATTTGTATAAAGGTACTTTTTGTAGCCAGGATGTGGCTATTAAAGTTCTCAAGACTCAGCATTTAAATGAAGATATGTGGAGGGAATTTTCTCAAGAAGTCTATATTATGAGAAAAGTTCGGCACAAGAATATTGTGCAATTTATTGGTGCATGTACCAGACCTCCAAGCCTGTGCATTGTGACTGAGTTTATGTTTGGTGGAAGTGTCTATGACTTTCTGCATAAGCAAAAGGGCAGTTTTAAGCTTCCATCCTTGCTCAAAGTAGCAATTGATGTGTCCAAGGGAATGAATTACTTGCATCAAAATGACATAATCCACAGGGACCTGAAAGCTGCCAATATTCTGATGGATGAAAACAAAGTTGTTAAGGTTGCTGATTTTGGTGTTGCTAGAGTACAAGCTCAATCTGGAGTCATGACTGCTGAAACTGGAACTTATCGTTGGATGGCTCCAGAGGTCATTGAACATAAACCATATGATCACAAGGCTGATGTTTTCAGCTTCGGAATTGTATTGTGGGAGCTTCTAACAGGAAAGCTTCCTTATGAGCACTTAACCCCATTACAAGCTGCAGTTGGTGTGGTCCAGAAGGGTCTAAGGCCTACTATTCCGAGTCACACTTATCCATCACTTGTAAAATTGATCAAGAGATGCTGGCACCAGGAACCATCTTTAAGACCTGAATTCACTGAAATTATGGAGATATTGCAGCAGATAGCTAGCAAGGTTGTGGAAAAAAAGAGAGAGATCTTAGAGGGAAGAGGGAAAAGGCAGAAGGAGAAATCTATCTAG 1704 0.4261 MEDADSCSSRAVDSWPTHNRKQRQKVVEIYEEVRRRLKSWDNEEAMRPGFDDELWAHFSRLPTRYALDVNVERAEDVLTHKRLLQLAHDPATRPALEVRLVQVHPISGGIHGDSDPSNPLKKVDAQSHYHTSQRSTHPPSTFGLLPNMKVLVEAKNSHVQDGEGDVDANLRFWRLMHEVIISTNDKPKLLSQLTSLLSDIGLNIQEAHAFSTTDGYSLDVFVVEGWAHEETEQLRNVLLKEIQMIEKQPWSEFQLISPGREQGHPEKQLIPSHINLTIDGADVWEIDATLLKFENKIASGSYGDLYKGTFCSQDVAIKVLKTQHLNEDMWREFSQEVYIMRKVRHKNIVQFIGACTRPPSLCIVTEFMFGGSVYDFLHKQKGSFKLPSLLKVAIDVSKGMNYLHQNDIIHRDLKAANILMDENKVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEHLTPLQAAVGVVQKGLRPTIPSHTYPSLVKLIKRCWHQEPSLRPEFTEIMEILQQIASKVVEKKREILEGRGKRQKEKSI* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0168 567 Pfam Protein tyrosine and serine/threonine kinase 291 540 IPR001245 GO:0004672|GO:0006468
Vvi18g0168 567 SUPERFAMILY ACT-like 177 245 IPR045865 -
Vvi18g0168 567 PRINTS Tyrosine kinase catalytic domain signature 511 533 IPR001245 GO:0004672|GO:0006468
Vvi18g0168 567 PRINTS Tyrosine kinase catalytic domain signature 467 489 IPR001245 GO:0004672|GO:0006468
Vvi18g0168 567 PRINTS Tyrosine kinase catalytic domain signature 365 378 IPR001245 GO:0004672|GO:0006468
Vvi18g0168 567 PRINTS Tyrosine kinase catalytic domain signature 402 420 IPR001245 GO:0004672|GO:0006468
Vvi18g0168 567 PRINTS Tyrosine kinase catalytic domain signature 448 458 IPR001245 GO:0004672|GO:0006468
Vvi18g0168 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Vvi18g0168 567 SUPERFAMILY Protein kinase-like (PK-like) 272 540 IPR011009 -
Vvi18g0168 567 ProSiteProfiles ACT domain profile. 178 253 IPR002912 -
Vvi18g0168 567 MobiDBLite consensus disorder prediction 120 140 - -
Vvi18g0168 567 FunFam serine/threonine-protein kinase HT1 370 561 - -
Vvi18g0168 567 CDD STKc_MAP3K-like 297 540 - -
Vvi18g0168 567 ProSiteProfiles Protein kinase domain profile. 291 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0168 567 MobiDBLite consensus disorder prediction 107 140 - -
Vvi18g0168 567 SMART serkin_6 291 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0168 567 Gene3D Phosphorylase Kinase; domain 1 281 368 - -
Vvi18g0168 567 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 146 548 - -
Vvi18g0168 567 Gene3D Transferase(Phosphotransferase) domain 1 370 567 - -
Vvi18g0168 567 Coils Coil 228 248 - -
Vvi18g0168 567 FunFam Serine/threonine-protein kinase isoform 1 281 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0168 Vvi-Chr18 1477309 1491664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0168 2 552 MAP Kinase Kinase Kinase AT4G35780 63.587 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vvi18g0168 PK_Tyr_Ser-Thr 1.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0168 - - vvi:100253953 1150.58