Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0166 ATGTCAAGCCTTTACCAGTCTCTCTTGGATCGCACCCAAGACAATCACATGGCTCGGTCCATTGATTCTGGTAATTGGGAAGGAGTTTCAGTCAAGATTGATGATGGAAATCTTCATCTTCCACCAAATGAAGTCTCGCTCAGAGCGAAGGCCTTGACTGAAGAACGAGATGAACTAACCAAGAGTGGTCCATCAATGGGGCATGAAAGCCGCCGGCGCCTTGAAGATGTGTTGGTGTCTACTTCCATTCTATCTTCTTGGGGACACTCAAGGCGGGTGAGGGGTGCGACTCAGTCGAGGCTAATGGACCCACCTTCAAGTTTATTGAGGAAAAATGATGATGAGGAGGATGACATGGATGAAGATATGCTAGAAGATTATGCGCTAAACAAGTGCAGTGTGCTAACAATGGCTGAATGGGTGAGTCTTGTTTTAGTCGTAGCAGCTTTGTTTTGCAGTCGTTCAATACCTGCCTTAAGGAAGCAAATTCTGTGGGATCTTGCGCTGTGGAAATGGGAGGTTATGGGCTTGGTGATAATATGTGGGGGTTTGGTATCAGATTGGGGAGTTCGTCTTTCTGTGCACTTGATGGAGCGAAATTTTCTTTTGAGAAAAAGGGTTTTGTATTTTGTTTATGGGTTGAGGAGGGTTGTTCGGAATTGTCTATGGTTGGTTCTGGTTTTGATCGTTTGGGAATGTATTTTTTACCAGAAGGTTGAGATGGAAACCCACAGTAAGGCCTTGCCTTATGTAACCAAGGTTCTTGTATGCCTTCTGGTGTCTACCTTGATATGGCTTATTAAGATCATACTTGTTAAGGCTCTTGCTTCATCCTTCCACATGAACACTTTCTTTGATGAAATTCAGGAGTTGTTGGTTAAACAATATGTGATTAATAAGCTCTTGAAAGCTAAGGATGAGAAGCCTGGCAACTTCGGAGCTGACATCTTGGGGACAAAGAGTGGGGGTCCTGGTTCTAAGAAGGATAGTGAGATATCAATTGACCACCTAGATAAGCTGAGTCGGAGGAATGTGTCTGCTTGGAATATGAAGATTTTGATGGATAAGGTTCATTATAGGGGACTGTCCACTCTGGATGAGCTGATATTGCATTTAGGAATTGGGAATGAATGTCCGTTGGAGGAGAAGAATGGGTGCCGGGCCACAAAGGCAGCGGAGAAAATTCTTAAGGATATTGCTGCATCGGATCCCCAATACATCTACCTGGGTGATTTGGTGCGCTTTATGAGTGAATCTGATGCTAAGAAAACAATGGAATGCATTGGAGGAAAAGCTGAATGTGATAAAATCAGCAAGGCAACTCTTAAGAATTGGGTGGTTAGTGCAATTAAGGAAGGGAGGAAACTCGCATCATCTCTCAATGATACAAAAACAGCTGTAGATGAGCTCCACCGAATGTTGGATGTGTTTGTAGCTGTCCTCGTTGCAATAATCTGCCTTCTTATTCTCGGAGTTCCAATCACCCATTTCCTTCTCTTCATAAGTTCTCAACTTCTGCTGGTGGTGTTTGTTTTTGGGAACACATGCAAGACAACATTTGAAGCAATCATCTTCTTATTTGTGATGCACCCATATGATGTGGGTGATCGTTGTGAAATAGATGGAAACCAGGTGGTAGTTGAGGAGATGAACATATTAACCACCGTGTTTCTAAGGAGTGATAACCAAATGGTCATATACCCCAACTCTGTTCTTGCTACCAAGCCCATCTGTAATTACAAACGTAGTATGGATATAGTGGAGGCCATTGCTTTCTGTATCCACATCTCTACTCCAGTAAAAAAGATTGCCACATTCAAAGAGAAAATAAAACGGTATGTAGAAAGGAAGAGCGATCACTGGTATCCAGATCCAATGATAATCATCAAGGACGTGGAGGAACTGAACAAACTTAAAATGGCAGTGTATCTTACACACACAATGAACGGCCAGAATTCAGTGGAGATATTTACTAGGAGAAGCCTTTTGGTTGAGGAGATGATCAAAGTGTTCAGGGAGCTCGAAATTGAATACCGCATGCTGCCTCTTGATGTGAATATCAGAACCATGCCAGGTTTAGTTTCACTGGCCGCCTCCTAA 2100 0.4305 MSSLYQSLLDRTQDNHMARSIDSGNWEGVSVKIDDGNLHLPPNEVSLRAKALTEERDELTKSGPSMGHESRRRLEDVLVSTSILSSWGHSRRVRGATQSRLMDPPSSLLRKNDDEEDDMDEDMLEDYALNKCSVLTMAEWVSLVLVVAALFCSRSIPALRKQILWDLALWKWEVMGLVIICGGLVSDWGVRLSVHLMERNFLLRKRVLYFVYGLRRVVRNCLWLVLVLIVWECIFYQKVEMETHSKALPYVTKVLVCLLVSTLIWLIKIILVKALASSFHMNTFFDEIQELLVKQYVINKLLKAKDEKPGNFGADILGTKSGGPGSKKDSEISIDHLDKLSRRNVSAWNMKILMDKVHYRGLSTLDELILHLGIGNECPLEEKNGCRATKAAEKILKDIAASDPQYIYLGDLVRFMSESDAKKTMECIGGKAECDKISKATLKNWVVSAIKEGRKLASSLNDTKTAVDELHRMLDVFVAVLVAIICLLILGVPITHFLLFISSQLLLVVFVFGNTCKTTFEAIIFLFVMHPYDVGDRCEIDGNQVVVEEMNILTTVFLRSDNQMVIYPNSVLATKPICNYKRSMDIVEAIAFCIHISTPVKKIATFKEKIKRYVERKSDHWYPDPMIIIKDVEELNKLKMAVYLTHTMNGQNSVEIFTRRSLLVEEMIKVFRELEIEYRMLPLDVNIRTMPGLVSLAAS* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0166 699 MobiDBLite consensus disorder prediction 95 115 - -
Vvi18g0166 699 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 55 693 IPR016688 -
Vvi18g0166 699 PIRSF Memb_At2g17000 31 698 IPR016688 -
Vvi18g0166 699 FunFam Predicted mechanosensitive ion channel 531 580 - -
Vvi18g0166 699 Gene3D - 531 580 IPR023408 -
Vvi18g0166 699 SUPERFAMILY Sm-like ribonucleoproteins 520 580 IPR010920 -
Vvi18g0166 699 Pfam Mechanosensitive ion channel 474 677 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0166 Vvi-Chr18 1464440 1468615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0166 122 698 Mechanosensitive Ion Channel Family AT1G53470 49.519 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0166 K22048 - vvi:104882454 1360.13