Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0163 ATGTCGTCGCAGGAGAGAGCTGAGGACTCTACTCCAAACGGGTCCGGTGGGAATCTCTACTCTGTGTCGTTTGTCACCCATGAAGACATCGTTAGCCACTCCTCTCTGTTCTGGGATACTCTCAGGAGTTTTCATTATGAGATGGGCACCAAATTATCAATACCTGTGATTGGTGGGAAGCAGCTGAACTTGTATGTTCTGTATGTGGAGGTCACTCGAAGGGGTGGCTATCATAAGGTCGTGATGGATAAAAAATGGAGAGAGGTGAGCTCAGTTTTCAACTTCTCTCCAACAACCACAAGTGCTTCATATGTACTGAGGAAGCACTATTACAACATCCTTAGAAAATATGAACGTGCTTACTTCTTAAAGGGTCCACCTTTAAACGCAACTGCTTCTATCCCTGTCAGCGACCTCTCGAATTTGCAGCAAACGGCTGATGCGAGGAGAAACGCCTCTAATCCTCCCATTGGAGCTCCCATTTTAGCTGTTGGGACGATAAATGCAAAGTTCGATTGCGGGTACTTGGTGTCGGTGAAAATGGGGTCTGAAACCCTGAGTGGAGTGCTGTATCATCCTGGGCAGCCAAGTTCATACACGCCAATCAGAACTTCCAATACTACTGCTTCTCAAACCCTGATTACAAACAAGGCAGCACGCAAGAAGAAGCGAAAAAGAGGTGGTGAGCCCGGCCGCCCCAAGCCCAACAGGAGTGGTTACAACTTCTTTTTCTCAGAGAAGCATGCATTATTCAAGTCCCTATATCCAGACAGAGAGAGGGAGTTTACAAAAATGATTGGAGAGAGTTGGAGCAGCCTGAGCCTGGAGGAGAAGGAAGTTTATCAGAAGCTCGGGATAAAGGACAAGGAAAGGTACAAGAAAGAGATGAAAGAATACAAGGAGAGGATGGGGGCTGTGCAGCAGCGGCCTCAGGTGGTGGTGGAAGTTGGCAGGGCTGACAATGGGGGTCCATAG 975 0.48 MSSQERAEDSTPNGSGGNLYSVSFVTHEDIVSHSSLFWDTLRSFHYEMGTKLSIPVIGGKQLNLYVLYVEVTRRGGYHKVVMDKKWREVSSVFNFSPTTTSASYVLRKHYYNILRKYERAYFLKGPPLNATASIPVSDLSNLQQTADARRNASNPPIGAPILAVGTINAKFDCGYLVSVKMGSETLSGVLYHPGQPSSYTPIRTSNTTASQTLITNKAARKKKRKRGGEPGRPKPNRSGYNFFFSEKHALFKSLYPDREREFTKMIGESWSSLSLEEKEVYQKLGIKDKERYKKEMKEYKERMGAVQQRPQVVVEVGRADNGGP* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0163 324 CDD ARID_HMGB9-like 34 118 IPR045303 GO:0003677
Vvi18g0163 324 SMART bright_3 32 123 IPR001606 GO:0003677
Vvi18g0163 324 CDD HMG-box_AtHMGB9-like 233 299 - -
Vvi18g0163 324 SMART hmgende2 232 301 IPR009071 -
Vvi18g0163 324 SUPERFAMILY HMG-box 230 306 IPR036910 -
Vvi18g0163 324 MobiDBLite consensus disorder prediction 216 239 - -
Vvi18g0163 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 233 300 IPR009071 -
Vvi18g0163 324 SUPERFAMILY ARID-like 32 125 IPR036431 GO:0003677
Vvi18g0163 324 Gene3D - 25 133 IPR036431 GO:0003677
Vvi18g0163 324 Gene3D High mobility group box domain 215 315 IPR036910 -
Vvi18g0163 324 SMART ARID_2 28 118 - -
Vvi18g0163 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 311 - -
Vvi18g0163 324 ProSiteProfiles ARID domain profile. 31 122 IPR001606 GO:0003677
Vvi18g0163 324 Pfam ARID/BRIGHT DNA binding domain 36 118 IPR001606 GO:0003677
Vvi18g0163 324 Coils Coil 289 309 - -
Vvi18g0163 324 Pfam HMG (high mobility group) box 233 300 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0163 Vvi-Chr18 1453418 1455706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0163 20 303 ARID Transcription Factor Family AT1G76110 52.508 6.34e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vvi18g0163 ARID 9.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0163 - - vvi:100266033 607.446