Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0145 ATGGCCTCTTATCAACCATTGAAAGAGAAGGTGGCTGGTGAGAGTCAGACTAGGGGGAAGCCCATTCGATGCAGAGCTGCGGTTAGCAGAAAAGCAGGGGAGCCGCTGGTGATGGAGGAGGTGATGGTAGCTCCGCCGATGGCTGGTGAAGTTCGGATTCGGATCATCTGCACTTCGCTTTGCCACAGCGACCTCACCTTCTGGAAACTGAAGGAACCTCCAGCATGCTTTCCGAGAATTCTGGGCCATGAAGCCGTCGGGGTTGTGGAGAGTGTGGGGGAGAATGTAACTGAAGTAGCTGAAGGAGATACTGTGCTCCCAATATTCATTCCAGATTGCGGAGAATGCATGGATTGCAGATCGGAGAAGAGCAACCTATGCTCAAAATTCCCATTCGAAATCTCCCCTTGGTTGCCTAGACACAAGAGCAGCAGATTTACAGACCTTAAAGGAGAGGTTCTCTACCATTTTCTAAATGTCTCCAGTTTCAGTGAGTACACAGTTGTGGACATCGACAACATTACAAAAATTAGCCCTGCAATCCCACCAAACAAAGCATGCCTCTTCAGTTGTGGAGTATCCACTGGGGTTGGTGCCGCATGGAGAACGGCAAAAGTGGAAAAGGGGTCCACTGTTGTTATATTTGGGCTAGGAGCAATTGGATTGGCGGTTGCCGAGGGAGCAAGACTGTGTGGAGCTTCCAGAATTATTGGTGTGGATACCAACCTAGAGAAATTTGACGTTGCAAAGAAATTTGGAGTGACAGAGTTTGTCAACCCTAGAAACTGTGGGGATAAGCCAGTGAGCCAGGCGATTGTAGAGATGACTGATGGAGGGGCAGACTACTGCTTTGAATGCGTTGGCTTCGCATCCTTGGTGCAAGACGCATTTGCTTCCTGCCGAAAGGGTTGGGGGAAGGCGATCATGGTAGGAGTGGACAAGCCTGGTGCGATGTTAAACTTTAGTTCTGTTGAGATGCTTCATTGTGGAAAAAGTGTAATGGGAAGTATATATGGAGGTCTCAAACCCAAATCTCATATTCCAGTTCTTTTACAACGCCTGGTGGACAAGGAATTAAATGTGGATAACTTTATCACACATGAGATGAAGTTTGAAGACATCAATAAGGCTTTTGATTTACTCGCCAAAGGAAAGAGTATTCGATGTGTGATGTGGATGGACAAATAA 1188 0.4731 MASYQPLKEKVAGESQTRGKPIRCRAAVSRKAGEPLVMEEVMVAPPMAGEVRIRIICTSLCHSDLTFWKLKEPPACFPRILGHEAVGVVESVGENVTEVAEGDTVLPIFIPDCGECMDCRSEKSNLCSKFPFEISPWLPRHKSSRFTDLKGEVLYHFLNVSSFSEYTVVDIDNITKISPAIPPNKACLFSCGVSTGVGAAWRTAKVEKGSTVVIFGLGAIGLAVAEGARLCGASRIIGVDTNLEKFDVAKKFGVTEFVNPRNCGDKPVSQAIVEMTDGGADYCFECVGFASLVQDAFASCRKGWGKAIMVGVDKPGAMLNFSSVEMLHCGKSVMGSIYGGLKPKSHIPVLLQRLVDKELNVDNFITHEMKFEDINKAFDLLAKGKSIRCVMWMDK* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0145 395 Gene3D - 28 389 - -
Vvi18g0145 395 SUPERFAMILY GroES-like 17 207 IPR011032 -
Vvi18g0145 395 FunFam S-(hydroxymethyl)glutathione dehydrogenase 196 336 - -
Vvi18g0145 395 Pfam Alcohol dehydrogenase GroES-like domain 49 176 IPR013154 -
Vvi18g0145 395 Gene3D - 196 336 - -
Vvi18g0145 395 Pfam Zinc-binding dehydrogenase 219 343 IPR013149 -
Vvi18g0145 395 SUPERFAMILY GroES-like 344 392 IPR011032 -
Vvi18g0145 395 FunFam Alcohol dehydrogenase 6 27 208 - -
Vvi18g0145 395 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 82 96 IPR002328 GO:0008270|GO:0016491
Vvi18g0145 395 PANTHER ALCOHOL DEHYDROGENASE 19 391 - -
Vvi18g0145 395 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 181 355 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0145 Vvi-Chr18 1319712 1322860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0145 50 383 Monolignol Biosynthesis Gene Families AT2G21730 26.453 1.73e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0145 K00121 - vvi:100259248 806.979