Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0144 ATGATGGCTGGTGAGACGAGAGGGAAGCCAATTCGATGCAGAGCTGCGGTTTGTTGGAAGGCAGGGGAGCCGCTGGTGATGGAGGAGGTGATGGTGGCTCCGCCATTGGCCGGAGAAGTTCGGATTCGAATCATCTGCACGTCTCTCTGCTACAGCGACATCACCTTCTGGAAATTAAAGGACCCTCCGGGATGCTTTCCGAGAATACTGGGCCATGAAGCTGTGGGGGTTGTTGAGAGCGTGGGGGAGAATGTGAGTGAAGTAACTGAAGGAGATATTGTGCTTCCAATATTCTTGCCAGATTGCGGAGAATGCACAGATTGCAGATCGGAGAAGAGCAACCTATGTTCAAAATTCCCATTTAAAGTCTCACCTTGGATGCCTAGATATGAAAGCAGCAGATTCACAGACCTTAAGGGAGAGGTTCTCTACCATTTTCTATTTGTCTCAAGTTTTAGTGAGTACACAGTGGTAGATATCGCCAACATTACAAAAATTGACCCCAATATCCCGCCAAACAGGGCATGCCTCTTCAGCTGTGGAGTGTCAACAGGGGTTGGTGCTGCATGGAAAACAGCAAATGTGGAAAAGGGATCCACTGTTGCTATATTTGGGCTAGGGGCGATTGGATTAGCGGTAGCAGAGGGAGCAAGACTATGTGGCGCTTCTAGAATTATTGGTGTGGATTTGAACCCAGATAAATTTGAAATTGGGAAGAAATTCGGAGTCACAGACTTTGTCAACTCTGGAAACTGTGGGAACAAACCAGTGAAACAGGTGATTATGGAGATGACTGATGGAGGGGCAGACTACTGCTTTGAATGTGTTGGTGCAGCATCCTTAGTGCATGAAGCATTTGCTTGCTGCCGAAAGGGTTGGGGAAAGACAATTGTGCTAGGAGTGGACAGGCCGGGTTCAATGTTGAACTTTCTTTCTTTTGACATCCTTCACTCTGGGAAAAGCCTAATGGGAAGTCTGTATGGAGGTGTCAAACCCAAATCTGATATTCCGATTCTTTTAAAACGCTACATGGACAAGGAATTGGATGTGGATAAGTTTGTCACTCATGAGATGAGGTTTGAAGACATCAACAAAGCATTTGATCTACTCATTCAAGGGAAAAGCCTCCGATGTGTGCTTTGGATGGACAAATGA 1155 0.4641 MMAGETRGKPIRCRAAVCWKAGEPLVMEEVMVAPPLAGEVRIRIICTSLCYSDITFWKLKDPPGCFPRILGHEAVGVVESVGENVSEVTEGDIVLPIFLPDCGECTDCRSEKSNLCSKFPFKVSPWMPRYESSRFTDLKGEVLYHFLFVSSFSEYTVVDIANITKIDPNIPPNRACLFSCGVSTGVGAAWKTANVEKGSTVAIFGLGAIGLAVAEGARLCGASRIIGVDLNPDKFEIGKKFGVTDFVNSGNCGNKPVKQVIMEMTDGGADYCFECVGAASLVHEAFACCRKGWGKTIVLGVDRPGSMLNFLSFDILHSGKSLMGSLYGGVKPKSDIPILLKRYMDKELDVDKFVTHEMRFEDINKAFDLLIQGKSLRCVLWMDK* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0144 384 Gene3D - 185 325 - -
Vvi18g0144 384 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Vvi18g0144 384 Gene3D - 16 377 - -
Vvi18g0144 384 Pfam Alcohol dehydrogenase GroES-like domain 38 165 IPR013154 -
Vvi18g0144 384 PANTHER ALCOHOL DEHYDROGENASE 8 380 - -
Vvi18g0144 384 FunFam Alcohol dehydrogenase 6 16 197 - -
Vvi18g0144 384 Pfam Zinc-binding dehydrogenase 208 333 IPR013149 -
Vvi18g0144 384 SUPERFAMILY GroES-like 6 193 IPR011032 -
Vvi18g0144 384 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 346 IPR036291 -
Vvi18g0144 384 SUPERFAMILY GroES-like 333 381 IPR011032 -
Vvi18g0144 384 FunFam S-(hydroxymethyl)glutathione dehydrogenase 185 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0144 Vvi-Chr18 1307547 1310984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0144 39 372 Monolignol Biosynthesis Gene Families AT2G21890 24.348 1.15e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0144 K00121 - vvi:100264420 785.793