Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0139 ATGGCGAGAAAGTGGCAGAAGATGGCAGGCATTGGAAGGAGAAGAGAAATCTCTCTACCCAATGCCAGAAACACTAGATTAGCTGATAAGGGTCATTTTGTGGTTTACTCCATGGATAAGCGAAGGTTCATGGTGCCATTGGCGTATTTGAGTAGCAGCATTTTTATAGAGCTGTTGAGGATGTCTGAAGAAGAGTTTGGGCTGCCCGGAGATGGGCCTATCACTTTGCCTTTTGATGCTGCGACCATGGAGTATATGGTTTCAATGGTTGGAAGACACGTCTCTGAAGAGTTGGAGAAGGCTTTGCTTGTTTCATTGGCGAATACTACAAGTCTCTGCTTTGCAACTGCTTCTGTTTACGGAGGACTGAGGAGCAGAATCATTGTTCAAGGATTGTGA 399 0.4536 MARKWQKMAGIGRRREISLPNARNTRLADKGHFVVYSMDKRRFMVPLAYLSSSIFIELLRMSEEEFGLPGDGPITLPFDAATMEYMVSMVGRHVSEELEKALLVSLANTTSLCFATASVYGGLRSRIIVQGL* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0139 132 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 110 IPR003676 GO:0009733
Vvi18g0139 132 Pfam Auxin responsive protein 4 90 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0139 Vvi-Chr18 1262287 1262685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0139 1 92 Calmodulin-binding Proteins AT4G34750 32.632 9.17e-11 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0139 - - vvi:100260938 259.996