Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0138 ATGGCGCACAATAGCGAGCTGATGGTCGATCCCAGGAGTGGGTTTTGCAGATCGAACTCCGTTTTTTATAGTAAACGTAATCCCGTTTCTCTGCCGCAGAAGGAGTTTATCGACGTCACCACCTTCATCTCTTCCCGGCCTCATCCTGGGAAGACGGCCTTCATCGACGCGGCCTCAGGCCACCGCCTCAGTTTCTACGAAGTCTGGAGAGCCGTCGATGCCGTGTCGAGTTGTCTCGCCGACATGGGGATCCGGAAAGGCCATGTCATCCTTTTGCTGTCTCCCAACTCCATTTTGTTCCCCATCGTTTGTCTCTCGGTGATGTCTCTCGGCGCCGTGATCACTACCACGAACCCACTCAACACGGCTCGCGAAATCGGCAAGCAGATAGCCGATTCCAAGCCTGTTCTTGCGTTCACGATTCCGTCACTCGTGCCCAAACTCGCGGGGTCGAATCTGCCCATTGTGTTGATGGGGGGAGAGGGAAACACCCCAGCTCCTGCTGGGGTTGTGGGTTCATTAGAAGAAATGATGAGGAGGGAGCCGAGTGGGAAGCGAGTCGGGGAGCGAGTTAACCAGGAGGACACGGCGACGCTGCTCTACTCGTCCGGCACCACCGGCGCGAGCAAAGGAGTGGTGTCGTCGCATAGAAACCTCATCGCCATGGTTCAGACCATCGTGAGCCGGTTCAGCTCCGAAGATGGAGAGCAGACCTTCATCTGCACCGTCCCCATGTTCCACATCTACGGCTTAGCGGCGTTCGCAATGGGTATGCTGGCGTCGGGATCAACGGTGGTGGTGCTCTCGAGATTCGAGATGGATGAGATGCTTTCTTCCATCTCCAAGTACCGAGCCACGTGCCTGCCTCTCGTGCCGCCCATACTGGTGGCGCTCGTTCACAGCGCTGATAAAATTAAGGCCAAGTACGATTTGAATTCTCTACAATCTACTCTCTCCGGTGGAGCTCCACTGAGCAAGGAGGTCATAGAGGGGTTCGCAGAAAAATACCCATCTGTGAAAATTCTTCAAGGATACGGCCTGACAGAGTCCACCGGCATCGGAGCTTCTACGGACTCTCTGGAGGAGAGCCGCCGGTACGGGACGGCGGGGCTGTTGTCGCCGAGCATGGAGGCTAAGATCGTGGACCCAGGAAGTGGAAAGGCATTGACGGTGAACCAGACCGGAGAGCTTTGGCTGAGAGGTCCCACCATTATGAAAGGTTATTTCAGTAATCCAGAAGTGACTACATCCACTCTTGATTCAAGTGGATGGTTGAGAACTGGAGATCTCTGCTACATCGATGATGATGGATTCATTTTCATTGTTGATAGGTTGAAGGAGCTGATCAAATACAAAGGATATCAGGTTCCTCCAGCTGAACTAGAGGCCTTGTTACTTACTCACCCAGAGATTGCTGATGCTGCTGTTATACCATTCCCAGATAAGGAAGTGGGGCAATATCCTATGGCATACATTAATAGAAAAGCAGGAAGCAATCTGTCCGAGTCTGCGGTCATGGATTTCATAGCAAAACAGGTGGCTCCATACAAGAGAATCCGGCGAGTCGCATTTGTAGATTCCATTCCCAAAAATGCATCAGGCAAGATTCTGAGGAAGGATCTCATACAACTTGCAACCTCCAAACTCTGA 1650 0.5273 MAHNSELMVDPRSGFCRSNSVFYSKRNPVSLPQKEFIDVTTFISSRPHPGKTAFIDAASGHRLSFYEVWRAVDAVSSCLADMGIRKGHVILLLSPNSILFPIVCLSVMSLGAVITTTNPLNTAREIGKQIADSKPVLAFTIPSLVPKLAGSNLPIVLMGGEGNTPAPAGVVGSLEEMMRREPSGKRVGERVNQEDTATLLYSSGTTGASKGVVSSHRNLIAMVQTIVSRFSSEDGEQTFICTVPMFHIYGLAAFAMGMLASGSTVVVLSRFEMDEMLSSISKYRATCLPLVPPILVALVHSADKIKAKYDLNSLQSTLSGGAPLSKEVIEGFAEKYPSVKILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSMEAKIVDPGSGKALTVNQTGELWLRGPTIMKGYFSNPEVTTSTLDSSGWLRTGDLCYIDDDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDKEVGQYPMAYINRKAGSNLSESAVMDFIAKQVAPYKRIRRVAFVDSIPKNASGKILRKDLIQLATSKL* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0138 549 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Vvi18g0138 549 Gene3D - 447 548 IPR045851 -
Vvi18g0138 549 CDD 4CL 31 541 - -
Vvi18g0138 549 FunFam Long-chain-fatty-acid--CoA ligase FadD 23 446 - -
Vvi18g0138 549 SUPERFAMILY Acetyl-CoA synthetase-like 46 547 - -
Vvi18g0138 549 Gene3D - 19 446 IPR042099 -
Vvi18g0138 549 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Vvi18g0138 549 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 15 543 - -
Vvi18g0138 549 Pfam AMP-binding enzyme 46 451 IPR000873 -
Vvi18g0138 549 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0138 Vvi-Chr18 1253932 1257513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0138 7 549 Monolignol Biosynthesis Gene Families AT1G20500 65.876 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0138 K10526 - vvi:100243654 1065.06