Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0131 ATGGGCTGTTGCCAATCATCGCTGTTCAAGCGAACTCGCTCGGACAAGGACAGATATCCCCAGACGACTGGTTTGAACCACACGCCGCCGTCTAATGGCACTGACGCTGCCGCCGCAGGTGTCGGAGATGGGGGCGAAGGAGCTGGCGGAGTGCCAGCTTTCTCGGAGTTCTCGCTCGCGGACCTCAAGGCCGCCACGAACAACTTTAGCTCCGACTTTATCGTGTCCGAGAGCGGAGAGAAGGCCCCCAACGTGGTTTACAAGGGCCGCCTCCAGAACCGGAGGTGGATCGCGGTGAAGAAGTTTACCAAATTGGCCTGGCCCGATCCTAAGCAGTTTGCGGACGAAGCATGGGGCGTTGGGAAGCTGAGACATAGAAGACTTGCGAATTTGATTGGGTACTGCTGCGATGGTGATGAGAGGCTGCTTGTGGCTGAGTATATGCCGAACGATACTCTTGCGAAGCATCTATTCCACTGGGAGAACCAAACAATCGAGTGGGCAATGCGTTTAAGAGTTGCTCTATATATTGCTGAAGCATTAGATTATTGTAGTGCCGAAGGGCGGCCATTGTACCATGACTTGAATGCTTACAGGGTTCTCTTTGATGAGCAGAATGGTGATCCACGGCTTTCTTGCTTTGGTATGATGAAAAATAGCAGAGATGGAAAAAGTTACAGCACAAATCTTGCCTATACACCTCCTGAGTATCTAAGAAATGGAAGGGTTACTCCTGAAAGTGTTATCTTCAGCTTTGGGACTGTACTTCTGGATCTCCTTAGTGGAAAGCATATTCCTCCAAGTCATGCTCTGGATATGATACGGGGTAAAAATATTCCCCTATTAATGGATTCACATTTGGAAGGAAACTTCTCAACTGAGGAGGCAACTGTGGTTTTTGAGCTTGCCTCACAATGCTTGCAGTATGAACCTAGGGAGCGGCCAAGTCCTAGAAACCTTGTTGAGACGCTTGCGCCACTTCAAAATAAACCGGATGTCCCATCTTATGTGATGCTTGGAATTCCAAAGCACGAGGAGGCACCTCCTACACCACAACACCCTCTTTCTCCAATGGGTGATGCCTGTACACGAATGGACCTCACAGCTATCCATCAGATTTTAGTAATGACACACTATAAAGATGATGAAGGAACCAATGAGTTATCTTTCCAAGAATGGACACAACAAATGAGAGATATGCTTGAGGCAAGAAAGCGTGGGGACTTAGCATTCCGTGACAAAGATTTTAAAACAGCCATAGATTGTTATTCGCAGTTTATAGATGTGGGAACCATGGTATCCCCAACTGTTTATGCACGGCGGAGTCTTTGCTATCTTCTCTGTGATCAACCTGATACCGCCCTCCGGGATGCAATGCAAGCACAATGTGTTTATCCAGACTGGTCAACTGCCTTCTACATGCAGGCAGTTGCCCTGGCCAAGCTAGACATGCACAAGGATGCAGCTGACATGTTGAATGAAGCTGCAGCACTTGAAGAAAAACGGCAACGGGGCGGGAGAGGATCCTGA 1530 0.4863 MGCCQSSLFKRTRSDKDRYPQTTGLNHTPPSNGTDAAAAGVGDGGEGAGGVPAFSEFSLADLKAATNNFSSDFIVSESGEKAPNVVYKGRLQNRRWIAVKKFTKLAWPDPKQFADEAWGVGKLRHRRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSAEGRPLYHDLNAYRVLFDEQNGDPRLSCFGMMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPSHALDMIRGKNIPLLMDSHLEGNFSTEEATVVFELASQCLQYEPRERPSPRNLVETLAPLQNKPDVPSYVMLGIPKHEEAPPTPQHPLSPMGDACTRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDLAFRDKDFKTAIDCYSQFIDVGTMVSPTVYARRSLCYLLCDQPDTALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLNEAAALEEKRQRGGRGS* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0131 509 Coils Coil 508 509 - -
Vvi18g0131 509 FunFam probable serine/threonine-protein kinase At4g35230 45 147 - -
Vvi18g0131 509 MobiDBLite consensus disorder prediction 15 42 - -
Vvi18g0131 509 Gene3D Transferase(Phosphotransferase) domain 1 149 340 - -
Vvi18g0131 509 ProSiteProfiles Protein kinase domain profile. 72 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0131 509 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 43 504 IPR045845 GO:0004672|GO:0009742
Vvi18g0131 509 FunFam probable serine/threonine-protein kinase At5g41260 149 341 - -
Vvi18g0131 509 Gene3D Tetratricopeptide repeat domain 398 506 IPR011990 GO:0005515
Vvi18g0131 509 SUPERFAMILY TPR-like 403 500 IPR011990 GO:0005515
Vvi18g0131 509 Gene3D Phosphorylase Kinase; domain 1 48 147 - -
Vvi18g0131 509 SUPERFAMILY Protein kinase-like (PK-like) 55 334 IPR011009 -
Vvi18g0131 509 Pfam Protein kinase domain 85 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0131 509 FunFam probable serine/threonine-protein kinase At4g35230 398 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0131 Vvi-Chr18 1204422 1214688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0131 53 351 Glycoside Hydrolase AT3G07070 33.639 1.35e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vvi18g0131 Pkinase 9.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0131 K14500 - vvi:100245381 1018.45