Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0099 ATGGATTTGGATTTCATGGACGAGTTGTTTTTAGGAGGATGCTGGTTAGAGACAACTGATGGATCTGAGTTCTTGCTACAGAGTCCATCTAATTCTGGTTCTGTCTTTGATCCTTCATCTTTATGGCCTACTTTTGGATCAAATAATTCTCTTAGTCAGAGTATGACAAATGTTGCAGGGTATCCAGTTCAATCAGAAAACTATTTAATGGATGATTTTGATCTTAGTAGAAGGTGGTGGATTCGACCCAAGTCAAGTCCGGGTCCTTCATCTACTGTAATGGAGAGATTAATTCGAGCACTTAGTTACATACGAGGTTCCACAAAAAATAAAGACGCACTTATTCAAATATGGGTGCCAGTAAATAGGGGTGGCCGAAGAGTTCTTACAACTAATGACCAACCTTTCTCGCTCGATCCCAGCTGCCCGAGGCTTGCAAGGTATAGAGACATTTCTGTGAGCTATCAGTTCTCAGCTGAGGAGGATTCCAATGAATTGGCTGGACTGCCTGGGCGAGTTTTTTTGGGCAAGGTTCCTGAGTGGACTCCTGATGTTCGCTTCTTTAGAAGTGAGGAGTACCCTAGAGTCGACTATGCTCAACATTTTGATGTCCGTGGAACTCTCGCACTTCCAGTTTTTGAACAAGGCAGCCAGACATGCTTGGGTGTTATTGAGGTTGTGATGACCACTCAAAAGAGTAACTATCGTCCTGAGCTGGAAAGCGTCTGCAAAGCACTTGAGGCTGTTGATCTGCGGAGTTCTGAAGTTCTGAGCACAAGGAATGTAAAGGCATGCAACAAGTTCTACCAAGCCGCATTACCCGAGATTCTAGAGGTCTTGACATCCGCCTGTGGAACACATGGACTGCCTTTGGCTCAAACTTGGGTCCCATGCATCCAACAAGGTAAATGGGGCTCCCGGCACACTGATGGGAACTACATCCACTGTGTTTCCACTGTGGATTCTGCTTGTTGTGTAGCTGATCCCCGTACCCAGGGTTTTCATGAGGCTTGCTCTGAGCACCACCTACTGAAAGGTCAAGGCATTGCTGGAAGAGCATTCACAACTAATGAACCGTGCTTCTCAGCTGACATAACCTCCTTTAGCAAGACTCAATATCCCCTCTCTCATCATGCGAGGATGTTTGGACTGTGTGCTGCTGTTGCAATACGCCTGCGGAGTATTCACGTTCCTGTGTCTGACTTTGTCTTGGAGTTCTTTTTGCCTGTAGATTGCAGGGATCCTGAAGAACAAAAGGGGATGCTTTGTTCATTGTCCATCATCATACAGAAGGTTTGCCGGAGCCTACGGGTTGTCACAGACAAGGAGCTGGAGGGGGAAACTCCTTCCCTGGTTAGTGAATTGACAGTCCTCTCAGATGGAAGTCCCGGCAGGGAAGAAACACAGAAGGTGCAACATACACCCACCGAAAAAATTTCCCAAGAACAGTCATCCTGGATGGCCTCTCTCAAGGAGGCCCAACAGAGTATTGATATTACCCCGCCATCCCAAAAGGAAAAAGTGAGGGAAAGGTTAAGTGAAAAATCCTTGGAGTTTAGACAGCATCAACAAGATTCAAGCCAACAAGGAAGTTTTGACTGTAGAGATGATTCTACTTTTGGTAAGAGTAGCTTATCTAGTGTGGGTAAAACAGGAGAAAGAAGACGTAGCAAGGCAGAACAAACCATCACACTGCAAGTTCTTCAGCAATATTTCGCCGGGAGCCTAAAAGATGCTGCAAAGAGCATTGGAGTTTGTCCCACAACCTTGAAAAGGATATGCAGGCAACATGGGATCAAACGTTGGCCTTCTCGGAAAATTAAGAAGGTTGGTCACTCCTTACATAAAATACAACTTGTGATCGACTCAGTCAAAGGTGCATCTGGTGCTTTTCAAATCGGTAACTTCTATTCAAAATTCCCAGAACTGGCCTCGCCAGAGTTATCAGGAACCCACCCATATTCAACTTCAAAGCTTTTTGATCACCAAAATCCATTAAGCGTTCAACCTGAGGGAGACAATTCCAGCACTGGAGTTGCTGCATCAAAATCTCTTTCATCTTCATGCAGCCCGAGTTCCAGTTCAAGTCAGTGCTGTTCCACTGGGACTCAGGAACATCCTTCCACATCCATACCACAAAGTGGTAGCCTGGCATCTCAAGAAGGGGATGCCTGGAGAGTGAAGGTCACGTATGGGGATGAGAAGATCCGTTTCCGGATGCAAAGTAACTGGGGATTAAAAGACCTGCGGCAAGAAATTGGGAGGCGATTCAATATAGATGACAGCAGTGGATTCCATCTCAAGTATTTGGATGATGACTTAGAGTGGGTGTTGTTAACATGTGAGGCCGATTTTGAGGAGTGTAAGGACATATGCGGATCGTCTCAGAACCACGTGATAAGGCTCGCCATCCATCAAATTTCTCATCATCTGGGAAGTTCTTTAGGTAGTACTTGCCCTTAG 2463 0.4572 MDLDFMDELFLGGCWLETTDGSEFLLQSPSNSGSVFDPSSLWPTFGSNNSLSQSMTNVAGYPVQSENYLMDDFDLSRRWWIRPKSSPGPSSTVMERLIRALSYIRGSTKNKDALIQIWVPVNRGGRRVLTTNDQPFSLDPSCPRLARYRDISVSYQFSAEEDSNELAGLPGRVFLGKVPEWTPDVRFFRSEEYPRVDYAQHFDVRGTLALPVFEQGSQTCLGVIEVVMTTQKSNYRPELESVCKALEAVDLRSSEVLSTRNVKACNKFYQAALPEILEVLTSACGTHGLPLAQTWVPCIQQGKWGSRHTDGNYIHCVSTVDSACCVADPRTQGFHEACSEHHLLKGQGIAGRAFTTNEPCFSADITSFSKTQYPLSHHARMFGLCAAVAIRLRSIHVPVSDFVLEFFLPVDCRDPEEQKGMLCSLSIIIQKVCRSLRVVTDKELEGETPSLVSELTVLSDGSPGREETQKVQHTPTEKISQEQSSWMASLKEAQQSIDITPPSQKEKVRERLSEKSLEFRQHQQDSSQQGSFDCRDDSTFGKSSLSSVGKTGERRRSKAEQTITLQVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKVGHSLHKIQLVIDSVKGASGAFQIGNFYSKFPELASPELSGTHPYSTSKLFDHQNPLSVQPEGDNSSTGVAASKSLSSSCSPSSSSSQCCSTGTQEHPSTSIPQSGSLASQEGDAWRVKVTYGDEKIRFRMQSNWGLKDLRQEIGRRFNIDDSSGFHLKYLDDDLEWVLLTCEADFEECKDICGSSQNHVIRLAIHQISHHLGSSLGSTCP* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0099 820 Gene3D - 721 806 - -
Vvi18g0099 820 CDD PB1_NLP 726 806 IPR034891 -
Vvi18g0099 820 ProSiteProfiles PB1 domain profile. 724 807 IPR000270 GO:0005515
Vvi18g0099 820 MobiDBLite consensus disorder prediction 474 502 - -
Vvi18g0099 820 MobiDBLite consensus disorder prediction 503 521 - -
Vvi18g0099 820 PANTHER PROTEIN NLP8 66 818 IPR045012 GO:0003700
Vvi18g0099 820 SUPERFAMILY CAD & PB1 domains 714 811 - -
Vvi18g0099 820 MobiDBLite consensus disorder prediction 454 560 - -
Vvi18g0099 820 MobiDBLite consensus disorder prediction 654 719 - -
Vvi18g0099 820 Pfam RWP-RK domain 562 610 IPR003035 -
Vvi18g0099 820 Coils Coil 505 525 - -
Vvi18g0099 820 MobiDBLite consensus disorder prediction 522 548 - -
Vvi18g0099 820 ProSiteProfiles RWP-RK domain profile. 549 630 IPR003035 -
Vvi18g0099 820 SMART PB1_new 724 807 IPR000270 GO:0005515
Vvi18g0099 820 Pfam PB1 domain 726 806 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0099 Vvi-Chr18 908791 913154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0099 1 811 NLP Transcription Factor Family AT1G20640 52.375 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vvi18g0099 PB1 7.6e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0099 - - vvi:100253057 1572.76