Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0097 ATGGGTAACTGCTGCGGAGCTCAAGCGAACGTAAACCCAGCGTCCAGCAAACCTCCCAGTCCAGAGCTGTCGAATAATAACATCAAACAAGATAAATCGATCAAAGAAAGAAGCGGCAGTGGCAGTGGAAATGGCAGCTCCAATGGTGGCGAAAAAACTGAGACAGCTGAAACGGGGAAAATCATAACGCCCAATTTGAAGATGTTCACTTTCGCAGAGCTGAAGAGCGCCACCAGAAACTTCAGGCCAGACACAATGTTGGGTGAAGGAGGTTTTGGCAGAGTTTTTAAGGGATGGGTCGATGAAAAGACTTACGCCCCGACAAAGGTCAGCGTCGGCATACCAGTTGCAGTGAAGAAATCCAATCCTGAGAGCGAACAGGGCCTCAAGGAATGGCAGTCTGAGGTGAAATTCTTGGGAAAATTCACTCATCCCAACCTTGTGAAGCTCCTGGGTTATTGTTGGGAGGATAAGCAATTCCTCCTTGTTTATGAATACATGCAAAAGGGAAGTTTGGAGAATCATCTTTTCCGAGTTGGAGCGGAGCCACTTACATGGGAAATTCGCCTTAAAATAGCAATAGGAGCAGCTCGAGGTCTAGCTTTTTTACACACTTCTGAGAAGACAGTGATCTACAGAGACTTCAAGTCCTCTAATGTTTTGTTGGATGGGGATTACAATGCCAAACTTTCTGATTTCGGGTTGGCAAAATTGGGCCCATCGAATGGTGATTCGCACGTGACAACTCGAATTGTTGGCACCTATGGCTATGCAGCTCCAGAATATATAGCCACAGGTCATCTGTACGTGAAAAGCGATGTATATGGTTTTGGAGTAGTTCTACTGGAAATGCTCACAGGCAATCAAGCCCTTGACTTGAACCGGCCGCCGGGACAACAAAATTTGGTGGAATGGGCTAAGCCATCGCTTACCAACAAGAGAAAGCTAAAGAAAATCATGGACCCACGACTAAGGGACCAATACCCATTAAAAGCAGCAGCCCAAGCAGCCGAGCTTATACTCAAATGCCTGGAATCTGATCCCAAAAATAGGCCATCCATGGAAGAGGTGCTAGAAACCTTGAAACGCATCAATGAAATCAAGGAAAAACCAAATAGCAAGGAAGTTAAAGTTGCCACGAATCAACCTCAGCTTCACCATCATCGGTCTCCGTATCACCCCAAACATGGCGGGGCCGGCGCCGGCATCGGAGCTCGAACTCCTCGACATGGGCGTATGGATAGGAGAGGTCGACAGTTGACACCAAAGGTAGGTTGA 1278 0.4726 MGNCCGAQANVNPASSKPPSPELSNNNIKQDKSIKERSGSGSGNGSSNGGEKTETAETGKIITPNLKMFTFAELKSATRNFRPDTMLGEGGFGRVFKGWVDEKTYAPTKVSVGIPVAVKKSNPESEQGLKEWQSEVKFLGKFTHPNLVKLLGYCWEDKQFLLVYEYMQKGSLENHLFRVGAEPLTWEIRLKIAIGAARGLAFLHTSEKTVIYRDFKSSNVLLDGDYNAKLSDFGLAKLGPSNGDSHVTTRIVGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGNQALDLNRPPGQQNLVEWAKPSLTNKRKLKKIMDPRLRDQYPLKAAAQAAELILKCLESDPKNRPSMEEVLETLKRINEIKEKPNSKEVKVATNQPQLHHHRSPYHPKHGGAGAGIGARTPRHGRMDRRGRQLTPKVG* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0097 425 CDD STKc_IRAK 87 364 - -
Vvi18g0097 425 Gene3D Transferase(Phosphotransferase) domain 1 167 386 - -
Vvi18g0097 425 MobiDBLite consensus disorder prediction 1 28 - -
Vvi18g0097 425 MobiDBLite consensus disorder prediction 408 425 - -
Vvi18g0097 425 ProSiteProfiles Protein kinase domain profile. 81 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0097 425 FunFam Serine/threonine-protein kinase PBS1 167 379 - -
Vvi18g0097 425 MobiDBLite consensus disorder prediction 37 59 - -
Vvi18g0097 425 ProSitePatterns Protein kinases ATP-binding region signature. 87 120 IPR017441 GO:0005524
Vvi18g0097 425 SUPERFAMILY Protein kinase-like (PK-like) 59 361 IPR011009 -
Vvi18g0097 425 MobiDBLite consensus disorder prediction 1 59 - -
Vvi18g0097 425 MobiDBLite consensus disorder prediction 369 425 - -
Vvi18g0097 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Vvi18g0097 425 Pfam Protein tyrosine and serine/threonine kinase 85 361 IPR001245 GO:0004672|GO:0006468
Vvi18g0097 425 PANTHER OS01G0588500 PROTEIN-RELATED 41 365 - -
Vvi18g0097 425 Gene3D Phosphorylase Kinase; domain 1 65 166 - -
Vvi18g0097 425 FunFam Serine/threonine-protein kinase BIK1 47 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0097 Vvi-Chr18 852845 856255 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0097 51 361 Glycoside Hydrolase AT3G07070 47.785 7.03e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi18g0097 PK_Tyr_Ser-Thr 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0097 - - vvi:100259897 849.351