Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0095 ATGAGTTGCCTTCCTTGTATGAGTCCTAGGAAGAGGGACGTGAGCAGAATAGAGGACGACAATGGCACAACTGGTCCATCAAGTTCTTGCCATTCTATTGATGATTCTTTGGGGACTACAAGGGGAAAGGGTTCTTTTGATTCTAGTGACAATGGAAAGGGAAAAGGGTCTCTGAACGGTAAAGCACACCCCAAAAGCAATGCGGCCCGGAGCTTCACATTCCGGCAGCTCGCCACAGCCACAAGAAACTTTAAGGCGACAAATTTGATCGGAGAAGGAGGATTTGGAAAAGTTTACAAGGGCCGCTTAGATACCGGCGAGATTGTTGCCATCAAACAACTCAACCATGATGGACTTCAGGGGTTTCAAGAATTCATTGTGGAGGTGCTCATGTTAAGCCTCTTACACCATTCTAATCTCGTCACCTTGATCGGTTACTGCACGGATGGAGATCAAAGACTATTGGTTTACGAGTACATGGCAATGGGTAGCTTGGAGCATCATCTTTTTGATCTGGGCCCTGACCAAGAACCATTAGGATGGAACACAAGGATACAGATTGCTGTTGGTGCCGCTCGAGGCCTGGAGTATCTCCATTGCAAAGCAAATCCACCGGTGATTTACCGGGATTTGAAATCTGCAAATATATTGTTGGACAATGAATTCAATCCTAAGCTCTCAGATTTTGGGCTTGCTAAACTGGGACCTGTGGGTGACAATACTCATGTCTCAACAAGAGTGATGGGCACATATGGATACTGTGCCCCTGAGTATGCCATGAGTGGCAAACTGACTCTTAAATCTGATATCTATAGCTTTGGTGTGGTTCTCTTGGAGCTGATTACGGGCCGGAAAGCAATCGACACCTCTAAGAGGCAGGGAGAGCAGAACCTAGTTGCTTGGTCTCGTCCTTTTCTAAAAGACCGGAAAAAGTTTATACAACTGGTGGATCCCCAGCTGCAAGGGAACTTCCCGGTCCGAGCTTTGCACCATGCTATTGCCATCACTGCAATGTGTCTTCAGGAGCAACCAAACTTCCGGCCCCTTATTGGCGATATTGTTGTCGCCCTCGAGTACTTAGCCTCCGAAAGCCACAGCTCCGAACCCCATAGGAATCAGGTCAGACTCCCATCATCATCACCTTCACAAGGGAGCAGGAACAGTAACAGTTTTTTACAAGAACCATATTCTAGAAATATTTTTTAG 1206 0.4668 MSCLPCMSPRKRDVSRIEDDNGTTGPSSSCHSIDDSLGTTRGKGSFDSSDNGKGKGSLNGKAHPKSNAARSFTFRQLATATRNFKATNLIGEGGFGKVYKGRLDTGEIVAIKQLNHDGLQGFQEFIVEVLMLSLLHHSNLVTLIGYCTDGDQRLLVYEYMAMGSLEHHLFDLGPDQEPLGWNTRIQIAVGAARGLEYLHCKANPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAIDTSKRQGEQNLVAWSRPFLKDRKKFIQLVDPQLQGNFPVRALHHAIAITAMCLQEQPNFRPLIGDIVVALEYLASESHSSEPHRNQVRLPSSSPSQGSRNSNSFLQEPYSRNIF* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0095 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vvi18g0095 401 MobiDBLite consensus disorder prediction 371 401 - -
Vvi18g0095 401 PANTHER OS07G0668900 PROTEIN 57 368 - -
Vvi18g0095 401 ProSitePatterns Protein kinases ATP-binding region signature. 90 112 IPR017441 GO:0005524
Vvi18g0095 401 MobiDBLite consensus disorder prediction 366 401 - -
Vvi18g0095 401 MobiDBLite consensus disorder prediction 20 55 - -
Vvi18g0095 401 Gene3D Transferase(Phosphotransferase) domain 1 160 379 - -
Vvi18g0095 401 Pfam Protein kinase domain 86 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0095 401 SUPERFAMILY Protein kinase-like (PK-like) 67 358 IPR011009 -
Vvi18g0095 401 Gene3D Phosphorylase Kinase; domain 1 57 159 - -
Vvi18g0095 401 ProSiteProfiles Protein kinase domain profile. 84 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0095 401 FunFam probable serine/threonine-protein kinase RLCKVII 57 159 - -
Vvi18g0095 401 SMART serkin_6 84 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0095 401 FunFam Serine/threonine-protein kinase PBS1 160 375 - -
Vvi18g0095 401 MobiDBLite consensus disorder prediction 1 65 - -
Vvi18g0095 401 CDD STKc_IRAK 90 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0095 Vvi-Chr18 836855 838752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0095 51 382 Glycoside Hydrolase AT3G07070 62.817 9.16e-157 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vvi18g0095 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0095 - - vvi:100266837 808.52