Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0090 ATGAAAGGAGGCCGATCCAAGTCCGATACAAAGAAAGCTGATGCCAAGCTTTCTGTGAAGAAAGGGGCTGCTGCTACGAAGGCAGGAAAGAAAACAAAGAAGGAAAAGCCAGTAAAGGACCCTAACAAGCCTAAGAGGCCAGCCAGTGCCTTTTTCGTTTTCATGGAAGAGTTTAGGAAGCAGTACAAGGAGAAGCACCCTTCCAATAAATCGGTCTCTGTGGTTGGCAAAGCTGGTGGGGATAAATGGAAGTCTATGTCTGAAGCCGAGAAGGCTCCCTATGTAGCGAAAGCAGAAAAGCGGAAAGTAGAATACGAGAAGAACATGAAAGCCTATAACAAAAAACAGGCTGAAGGTACCAAAGTAGTAGAGGAGGAGGATGAGTCTGAAAAATCCCTCTCCGAGGTGAATGATCAGGAGGATGACGAAGATGGCAGTGAAGAGGAGGAAGATGATGAGTAA 462 0.461 MKGGRSKSDTKKADAKLSVKKGAAATKAGKKTKKEKPVKDPNKPKRPASAFFVFMEEFRKQYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYNKKQAEGTKVVEEEDESEKSLSEVNDQEDDEDGSEEEEDDE* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0090 153 Pfam HMG (high mobility group) box 44 113 IPR009071 -
Vvi18g0090 153 MobiDBLite consensus disorder prediction 111 153 - -
Vvi18g0090 153 MobiDBLite consensus disorder prediction 1 47 - -
Vvi18g0090 153 MobiDBLite consensus disorder prediction 28 43 - -
Vvi18g0090 153 SMART hmgende2 43 114 IPR009071 -
Vvi18g0090 153 SUPERFAMILY HMG-box 31 119 IPR036910 -
Vvi18g0090 153 MobiDBLite consensus disorder prediction 111 128 - -
Vvi18g0090 153 CDD HMG-box_AtHMGB1-like 45 105 - -
Vvi18g0090 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Vvi18g0090 153 Coils Coil 95 115 - -
Vvi18g0090 153 MobiDBLite consensus disorder prediction 62 85 - -
Vvi18g0090 153 MobiDBLite consensus disorder prediction 129 153 - -
Vvi18g0090 153 MobiDBLite consensus disorder prediction 1 18 - -
Vvi18g0090 153 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 44 113 IPR009071 -
Vvi18g0090 153 Gene3D High mobility group box domain 27 129 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0090 Vvi-Chr18 807953 809293 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vvi18g0090 HMG_box 7.3e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0090 K25507 - vvi:100246082 232.646