Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0087 ATGATGGAGTGGGAAGCCCAAGAACTCCAGCAGCAGCCGCAGCATCACAATCAGAATCAGAATGGGGTTGTTGTTGGAGGAGGGAGTGGAGGGTTGTACGTGAAGGTGATGACTGATGAGCAAATGGAGCTGCTGAGGCGCCAGATCTCAGTCTACGCCACCATTTGTGAGCAGCTTGTTGAGATGCACAAGGCCATTACTACACAACAGGACCTCGCTGGGATGAGGCTGGGGAATATATACTGTGATCCATTGATGGCATCCGCTGGTCACAAGATCAGTAGCAGGCAGCGGTGGACTCCCACGCCTGTGCAGCTTCAAATTCTTGAGCGAATCTTTGATCAAGGCAATGGGACTCCAAGCAAGCAGAAGATTAAAGAGATAACCACTGAACTGACACAACATGGCCAAATTTCTGAAACCAACGTCTACAATTGGTTCCAGAACAGGAGGGCTCGGTCAAAGAGAAAGCAGTCAGTTCCATTACCGAATAATGCTGATTCAGAAGTAGAGACAGATGTCGAGTCCCCAAAAGAGAAGAAGACAAAACCTGATAATATCCAGTCCCATGAGAACTCAGCTCTGGGGACTGAAAATATATACTTCCAGAGTCCGGAAATGGGAAGTGAAATGCATTGCTTGGATACACAGCCTAACAAAGGGGAGCCCATGTTTCCATCTGATCGCAGTTTAAGATCTTCTGGCAGCTTGGGGCATTCATCTTTGTACGAAACCGGGGTTCCAAATCCAAGAATGGACCAGTTGATCGGTAAAGTGGAAGTTCCTGGTAGCTTTAGTCCTTATCGGCAGGGAGGGGAAGGGTTTGACATGGTTGGATGA 840 0.4821 MMEWEAQELQQQPQHHNQNQNGVVVGGGSGGLYVKVMTDEQMELLRRQISVYATICEQLVEMHKAITTQQDLAGMRLGNIYCDPLMASAGHKISSRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITTELTQHGQISETNVYNWFQNRRARSKRKQSVPLPNNADSEVETDVESPKEKKTKPDNIQSHENSALGTENIYFQSPEMGSEMHCLDTQPNKGEPMFPSDRSLRSSGSLGHSSLYETGVPNPRMDQLIGKVEVPGSFSPYRQGGEGFDMVG* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0087 279 Gene3D - 98 160 - -
Vvi18g0087 279 MobiDBLite consensus disorder prediction 1 22 - -
Vvi18g0087 279 MobiDBLite consensus disorder prediction 7 22 - -
Vvi18g0087 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 271 IPR044559 GO:0003700
Vvi18g0087 279 Pfam Homeodomain 96 156 IPR001356 GO:0003677
Vvi18g0087 279 MobiDBLite consensus disorder prediction 229 243 - -
Vvi18g0087 279 CDD homeodomain 96 158 IPR001356 GO:0003677
Vvi18g0087 279 SMART HOX_1 94 161 IPR001356 GO:0003677
Vvi18g0087 279 MobiDBLite consensus disorder prediction 153 197 - -
Vvi18g0087 279 MobiDBLite consensus disorder prediction 210 250 - -
Vvi18g0087 279 ProSiteProfiles 'Homeobox' domain profile. 92 157 IPR001356 GO:0003677
Vvi18g0087 279 MobiDBLite consensus disorder prediction 171 187 - -
Vvi18g0087 279 SUPERFAMILY Homeodomain-like 95 159 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0087 Vvi-Chr18 781234 784424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0087 1 268 Wox Gene Family AT4G35550 51.034 2.77e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vvi18g0087 Homeodomain 2.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0087 - - vvi:100251229 514.612