Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0080 ATGGCCGAGGGGGACACTATACGCACAATAGTTAAATTTTTGTCTCATGAGCTTTCCAAAGAGAGGGAGGAAGCTGTCTCTTTGTTGTATGAGCTTTCCAAATCTGAAACTTTGTGTGAAAAGATTGGCTCACTCAATGGAGCAATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAAATTTATTGACTGTTGAGAAGGCTGATAAAACACTGGAGAATCTTGAGATGTGTGAGAATAATATACGGCAGATGGCTGAAAATGGTCGACTGCATCCACTTCTTACTCAAATCCTTGAAGGTCCTCCAGAAACTAAATTGTCCATGGCTACTTACCTTGGTGAGCTGGTTCTGAACAATGATATGCAAGTCTTTGTGGCTAGAACTGTGGGCTTAGCGCTAATAAATATGATGAAAAGTGGCAACCTGCAATTGAGAGAAGCTGCTTTAAAAGCTTTAAACCAGATTTCATCTTTTGATGCCAGTGCCAGGGTGTTGATAGAGGAAGGAATTCTCCCCCCTCTCATCAAGGACCTCTTAACTGTTGGGACCAACCAACTTCCCATGCGACTCAAAGAGGTCTCTGCAACAATTCTTGCTAATGTTGTGCAGTCGGGCTATGATTTTGATTCCATCCCTGTTGGATCTGATCACCAGACTCTGGTCTCAGAAGACATAGTCCACAACCTACTCCATCTCATTAGCAACACTGGCCCGGCAATTGAGTGCAAGCTTCTTCAGGTTCTTGTTGGACTCACCAATTCTCCCACTGCAGTCCTGGATGTTGTTGCAGCCATTAAAAGCTCTGGCGCTACCATCAGTTTGGTTCAGTTTATTGAGGCCCCACAGAAGGAGTTGCGTCTGGCTTCCATAAAGCTTCTCCAGAATCTCTCTCCACACATGGGCCAGGAACTAGCTGATGCCCTGCGTGGCACAGCCGGCCAGCTTGGCAGCTTAATCAGAGTCATATCTGAAAATATTGGAATCACAGAAGAACAGGCAGTAGCTGCTGGGCTTTTAGCTGATCTCCCAGAGAGGGATTTGGGACTCACACGACAGATGTTAGATGAAGGTGCCTTTCAGATGGTCTTCTCTCGAGTTGTCAGGATCCGGCAGGGGGAAACTAGGGGCAACCGCTTCATGACTCCATATCTAGAAGGGCTTGTTCGCGTTCTTGCAAGGGTTACATTTGTGTTGGCTGACGAACCTGATGCCATTGCACTTTGCCGTGAGTACAATCTTGCTGCTGTCTTCACTGAACTGCTCCAGTCTAATGGCCTTGACAAGGTACAGATGGTTTCTGCCATGTCCCTAGAGAACCTATCACAAGAATCCAAAAACTTGACAAAGTTGCCTGAGTTGCCAGCACCTGGGTTTTGTGCCTCAATCTTTCCTTGTTTGAGCAAGCAGCCTGTCATAACTGGATTGTGTCGTCTCCACCGTGGCACGTGCTCGCTAAAAGATAGTTTTTGCCTTTTGGAAGGACAGGCCGTGGAGAAGTTGGTCGCTCTTTTAGACCACCAAAATGAGCAGGTTGTTGAAGCAGCACTGGCAGCAATATCAACTTTGTTGGATGATGGGGTAGATATTGAACAAGGGGTGAACATATTGTGTGAAGCAGAGGGAATCAAACCTATACTTGATGTATTACTTGAGAAACGGACAGAGAACCTGAGGAGGAGAGCCGTTTGGGCTGTTGAGAGAATTTTGAGGACTGATGAAATAGCTTATGAAATTTCTGGAGATCCAAATGTGAGCACAGCCCTCGTTGACGCCTTCCAGCATGCTGACTATCGGACCCGGCAGATTGCCGAGCGTGCCCTGAAACACGTGGACAAGATACCAAACTTCTCAGGCATCTTTCCAAACATAGGATAG 1881 0.462 MAEGDTIRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSLNGAILILVGMTSSKSENLLTVEKADKTLENLEMCENNIRQMAENGRLHPLLTQILEGPPETKLSMATYLGELVLNNDMQVFVARTVGLALINMMKSGNLQLREAALKALNQISSFDASARVLIEEGILPPLIKDLLTVGTNQLPMRLKEVSATILANVVQSGYDFDSIPVGSDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTNSPTAVLDVVAAIKSSGATISLVQFIEAPQKELRLASIKLLQNLSPHMGQELADALRGTAGQLGSLIRVISENIGITEEQAVAAGLLADLPERDLGLTRQMLDEGAFQMVFSRVVRIRQGETRGNRFMTPYLEGLVRVLARVTFVLADEPDAIALCREYNLAAVFTELLQSNGLDKVQMVSAMSLENLSQESKNLTKLPELPAPGFCASIFPCLSKQPVITGLCRLHRGTCSLKDSFCLLEGQAVEKLVALLDHQNEQVVEAALAAISTLLDDGVDIEQGVNILCEAEGIKPILDVLLEKRTENLRRRAVWAVERILRTDEIAYEISGDPNVSTALVDAFQHADYRTRQIAERALKHVDKIPNFSGIFPNIG* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0080 626 Coils Coil 69 89 - -
Vvi18g0080 626 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 622 - -
Vvi18g0080 626 Gene3D - 387 616 IPR011989 -
Vvi18g0080 626 SUPERFAMILY ARM repeat 4 257 IPR016024 -
Vvi18g0080 626 SUPERFAMILY ARM repeat 274 614 IPR016024 -
Vvi18g0080 626 Gene3D - 105 299 IPR011989 -
Vvi18g0080 626 Gene3D - 1 104 IPR011989 -
Vvi18g0080 626 SMART arm_5 485 526 IPR000225 GO:0005515
Vvi18g0080 626 SMART arm_5 121 159 IPR000225 GO:0005515
Vvi18g0080 626 SMART arm_5 79 119 IPR000225 GO:0005515
Vvi18g0080 626 SMART arm_5 530 572 IPR000225 GO:0005515
Vvi18g0080 626 SMART arm_5 160 205 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0080 Vvi-Chr18 731976 734573 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0080 1 626 U-box Gene Family AT1G76390 67.197 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0080 - - vvi:100252979 1198.34