Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0077 ATGGCGGCAGATAATTTGAAGCAACTCACAAATGGAAAGCCTCCGCGACACCTCTCAGTTATGCGGCATTGCATAAGCTCTGCTAGGCTGCTCGCTGCTACTGATTTTGAATTAGGTACTGGGATGATTGTTAAGTCCCCTCCAGATGGAAAATCAGGGTTTTTACCTGTGTTTCGATCAGGAAGCTGTGCTGAGAGAGGACCTAAACAGTACATGGAGGACGAGCACATATGTATAGATAATCTTATTGAACATCTAGGTGCAACTGCAGACTTTCCTTGCCCTGGAGCTTTCTATGGGGTGTTTGATGGCCATGGTGGCACAGATGCAGCATCATTTGTCAGAAAGAACATCCTCAAGTTCATGGTTGAGGATTCCCATTTTCCACTTTGTGTGCAAAAAGCTATTAAGAGTGCTTTTGTGAAAGCTGATCATGCATTTGCTGATGCCAGTTCTCTTGACATCTCCTCTGGCACCACTGCTCTAACTGCCTTTATTTTTGGAAGGACAATGCTAATTGCCAATGCTGGAGATTGTCGGGCTGTGCTAGGGAAACGAGGTAGAGCACTCGAGCTGTCCAGAGACCACAAACCCAACTGCCCATCTGAAAGATTAAGGATTGAGAAGCTTGGCGGAGTTGTCTATGATGGCTATCTCAATGGCCAACTATCTGTGGCACGTGCACTTGGGGATTGGCACATGAAGGTGCCCAAAGGCTCTGCCTGCCCCTTAAGCGCAGAGCCAGAGTTGCAGGAGACCCTCCTAACTGAGGACGATGAGTTCCTGATAATGGGCTGTGACGGCCTATGGGATGTAATGAGCAGCCAGTGTGCTGTGACGATGGCAAGGAAAGAACTAATGCTCCACAACGATCCTGAGAGATGTTCAAAAGAGTTGGTTAGGGAGGCACTGAAGCGCGACACCTGTGATAATCTAACGGTTATTGTGATTTGCTTCTCCCCAGATCCCCCTCCCCGGATTGAGGTCCCTCAATCACGTGTTCGGAGGAGTATATCGGCAGAAGGATTGAATTTTCTCAAGGGTGTACTAGACAGCAACTCTTGA 1065 0.4798 MAADNLKQLTNGKPPRHLSVMRHCISSARLLAATDFELGTGMIVKSPPDGKSGFLPVFRSGSCAERGPKQYMEDEHICIDNLIEHLGATADFPCPGAFYGVFDGHGGTDAASFVRKNILKFMVEDSHFPLCVQKAIKSAFVKADHAFADASSLDISSGTTALTAFIFGRTMLIANAGDCRAVLGKRGRALELSRDHKPNCPSERLRIEKLGGVVYDGYLNGQLSVARALGDWHMKVPKGSACPLSAEPELQETLLTEDDEFLIMGCDGLWDVMSSQCAVTMARKELMLHNDPERCSKELVREALKRDTCDNLTVIVICFSPDPPPRIEVPQSRVRRSISAEGLNFLKGVLDSNS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0077 354 PANTHER PROTEIN PHOSPHATASE 2C 53 317 IPR015655 GO:0004722|GO:0006470
Vvi18g0077 354 FunFam Probable protein phosphatase 2C 22 45 322 - -
Vvi18g0077 354 SMART PP2C_4 49 317 IPR001932 -
Vvi18g0077 354 CDD PP2Cc 58 319 IPR001932 -
Vvi18g0077 354 ProSiteProfiles PPM-type phosphatase domain profile. 59 319 IPR001932 -
Vvi18g0077 354 Gene3D - 49 322 IPR036457 -
Vvi18g0077 354 ProSitePatterns PPM-type phosphatase domain signature. 98 106 IPR000222 GO:0043169
Vvi18g0077 354 SUPERFAMILY PP2C-like 53 320 IPR036457 -
Vvi18g0077 354 Pfam Protein phosphatase 2C 60 311 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0077 Vvi-Chr18 708911 712359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0077 4 351 PP2C-type Phosphatase Gene Family AT2G33700 76.791 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0077 K14803 - vvi:100265005 701.819