Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0076 ATGAAACACTTATGCATAGACTGGTCTGTGGAGGCAGTGGGTCAGATTCGTCTTAATCAAAGCAAAGATAATTGTGCCATTCATTTAAAAATGAATGTGATTTGGCTTCTGTCATTGTTGTTTCTCTGTTTTGGAGTATTGTCAAATGGGTCTCAAAAGAATCTTTCTTCAAGACCAGCTGTTGTGAATGTTGGGGCGGTATTTACATTTGAATCTACAATTGGAAGAGTTGCCAAGATTGCCATTGAGGAAGCTGTGAAAGATGTGAACTCGGATGCTGGTGTTCTCACTGGAACCAAATTTGTTTTGACGATGCGAAATTCCAATTGCAGTGGGTTTATTGGCATGATTGGAGCTTTGCAGTTTATGGAGACTGAAACCATTGCGATTATAGGGCCACAATCTTCTGTGGTAGCCCATATGATATCCCATGTTGCAAATGAACTCCAAGTTCCTCTGTTATCATTTGCAGCCACAGATCCCACTCTCTCGTCTCTTCAGTTTCCCTTTTTTGTTAGGACAACACAGAGTGATTTGTACCAAATGAAGGCAATAACTGAGCTTGTTGATTATTATGGTTGGAGGTCGGTAATTGCAATCTTCATTGATGATGATTATGGAAGGAATGGTGTGTCAGCATTAGACGATGCACTTGCGGAGAAGCGCCTTAAAATATCCCACAAGGAAGGGATTCCCCCGGGAGCTAGTGCTAGTCAAGGTGACATTATGGATATTCTTGTTAAGGTTTCAGTGTTGGAGTCTCGAATTATTGTTCTGCATGTAAATCCTGATATAGGTTTCAAAGTTTTTTCCGTGGCACGCTATCTTGGAATGATGCAGAATGGATATGTTTGGATAGCTACAGATTGGCTCTCATCTGTTTTAGATACCTCATCCCCCCTTGCATCTGATACCATGGATTCAATGCAGGGAGTTCTTGTTTTGCGTCGACATACACCAGATTCAGATAGAAAGAGGGCCTTTTTATCTAGGTGGAAGAAGTTAACTGGTGGTTCTTTGGGGCTAAATTCTTATGGGCTTTATGCCTATGATACTGTTTGGCTGCTTGCTCATGCTCTTGATGCATTTTTTAATCAGGGTGGGACTATTTCATTTTCTAATGATTCCAAGCTACTTTCTATAGGAAGGGGTAGTCGTCACCTAGAAGAAATGAATGTTTTTGATGGAGGAATGCTCCTTCTTAACAATATATTGAAGAGTAATTTTGTGGGTTTAACGGGTCCCTTTAAGTTTACTTCAGACAGGTCCCTCTATGCTCCTGCATTTGATATTATAAATGTGATTGGAACCGGGTATAGACAGATTGGTTATTGGTCTAACTATTCTGGTCTTTCAACTGAAACTCCTGAGGCACTCTACGGAAAGCCACCCAATCGTTCAAGTGTAAACCAACGGCTATATGGTGTTGTCTGGCCTGGAGAGACATTGTCAAAGCCTCGTGGATGGGTTTTCCCAAACAATGGGAAGCTATTGAAAATTGGGGTACCCAATCGGGTCAGTTACCGGGAATTTGTATCACGAGTGCGAGGCACTGATATGTTCAAGGGCTTTTGCATAGATGTGTTTACAGCTGCTGTAACCTTGTTGCCATATGCTGTTCCATTTCAATATGTTTCTGTTGGAGATGGCCATAAAAACCCGAATTACTCGGAGCTTGTGCGTATGGTTGCAGAGGGTGAGCTTGATGCTGTGGTTGGCGACATTGCCATTGTCACTAGTCGGACAAGGATTGTGGATTTTACACAGCCATATGCTTCATCTGGACTTGTTGTTGTGGCCCCATTTAGGAAGTTGAACTCTGGCGCTTGGGCTTTCCTGCGCCCATTTTCTCCACTTATGTGGGGTGTTACTGCTTGTTTCTTCATTGTTATTGGGATAGTTGTATGGATTCTGGAGCATAGGATAAATGATGAATTCAGGGGACCACCTAAACACCAAATCATAACCATTCTATGGTTTAGCTTTTCAACTATGTTTTTTGCCCATAGGGAGAGCACTGTGAGTGCTCTTGGTCGTCTGGTGCTAATTATATGGCTTTTTGTAGTTTTGATAATCAACTCAAGCTACACTGCAAGTCTAACCTCAATACTCACAGTGCAACAGCTATCTTCTCCTATTAAAGGAGTTGAAAGCTTGATAAACAGTAATGATCCAATTGGATACCAGGTGGGTTCTTTTGCAGAACATTATTTGAGTGAGGAACTCAACATATCAGAATCTAGACTTGTTGCCCTTGGATCACCAGAAGAATATGCCAAAGCCCTTCAAAATGGTCCGGGAAAAGGAGGTGTTGCTGCAGTGGTTGATGAACGACCATATGTAGAGCTCTTTCTCTCAACCCAATGCAAGTTCAGGATTGTAGGTCAAGAGTTCACTAAAAGCGGTTGGGGTTTTGTGTTTCCACGAGACTCTCCCTTAGCCGTTGACATGTCGACTGCAATTCTAGCACTATCCGAGAATGGGGATCTCCAACGAATCCATGACAAGTGGCTGGCAACAAGCGCTTGCAGTTCAGAGAGTACTGAGCTTGAATCTGACCGACTTCACCTTAAGAGCTTCTGGGGCCTCTTTCTTATATGTGGGTTAGCTTGCTTTGTTGCTCTTGTCATATACTTCTTTCAGATTCTGCGCAAGTTTCGCAATGCTGCAGCTGTGGGAGCCAATTCAACTGGTACGGGTAGCTCACGTTCAGGGCATCTCCAGACACTCTTCTCGTTAATGGATGATAGGTCAGGCCACACAAAGACTGGGCATAAGAAGAGGAGAATAGAGAGATCATTATCAGAAAATGATAAAGAAGATGAGTTGAAGAGTAACCCAAAGAAGAAGCCAATACGAAATTCCTTAGAGATCACCACCAGCACAAGTGAGTAA 2895 0.4263 MKHLCIDWSVEAVGQIRLNQSKDNCAIHLKMNVIWLLSLLFLCFGVLSNGSQKNLSSRPAVVNVGAVFTFESTIGRVAKIAIEEAVKDVNSDAGVLTGTKFVLTMRNSNCSGFIGMIGALQFMETETIAIIGPQSSVVAHMISHVANELQVPLLSFAATDPTLSSLQFPFFVRTTQSDLYQMKAITELVDYYGWRSVIAIFIDDDYGRNGVSALDDALAEKRLKISHKEGIPPGASASQGDIMDILVKVSVLESRIIVLHVNPDIGFKVFSVARYLGMMQNGYVWIATDWLSSVLDTSSPLASDTMDSMQGVLVLRRHTPDSDRKRAFLSRWKKLTGGSLGLNSYGLYAYDTVWLLAHALDAFFNQGGTISFSNDSKLLSIGRGSRHLEEMNVFDGGMLLLNNILKSNFVGLTGPFKFTSDRSLYAPAFDIINVIGTGYRQIGYWSNYSGLSTETPEALYGKPPNRSSVNQRLYGVVWPGETLSKPRGWVFPNNGKLLKIGVPNRVSYREFVSRVRGTDMFKGFCIDVFTAAVTLLPYAVPFQYVSVGDGHKNPNYSELVRMVAEGELDAVVGDIAIVTSRTRIVDFTQPYASSGLVVVAPFRKLNSGAWAFLRPFSPLMWGVTACFFIVIGIVVWILEHRINDEFRGPPKHQIITILWFSFSTMFFAHRESTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPIKGVESLINSNDPIGYQVGSFAEHYLSEELNISESRLVALGSPEEYAKALQNGPGKGGVAAVVDERPYVELFLSTQCKFRIVGQEFTKSGWGFVFPRDSPLAVDMSTAILALSENGDLQRIHDKWLATSACSSESTELESDRLHLKSFWGLFLICGLACFVALVIYFFQILRKFRNAAAVGANSTGTGSSRSGHLQTLFSLMDDRSGHTKTGHKKRRIERSLSENDKEDELKSNPKKKPIRNSLEITTSTSE* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0076 964 Gene3D - 498 607 - -
Vvi18g0076 964 CDD PBP1_GABAb_receptor_plant 63 452 IPR044440 -
Vvi18g0076 964 Gene3D - 786 845 - -
Vvi18g0076 964 Pfam Bacterial extracellular solute-binding proteins, family 3 520 838 IPR001638 -
Vvi18g0076 964 FunFam Glutamate receptor 493 609 - -
Vvi18g0076 964 PIRSF IGluLR_plant 28 964 IPR017103 -
Vvi18g0076 964 SUPERFAMILY Periplasmic binding protein-like II 475 839 - -
Vvi18g0076 964 Gene3D - 177 451 - -
Vvi18g0076 964 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 75 91 - -
Vvi18g0076 964 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 349 361 - -
Vvi18g0076 964 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 135 163 - -
Vvi18g0076 964 SUPERFAMILY Periplasmic binding protein-like I 57 490 IPR028082 -
Vvi18g0076 964 PRINTS Metabotropic glutamate GPCR signature 197 214 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vvi18g0076 964 PRINTS Metabotropic glutamate GPCR signature 130 156 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vvi18g0076 964 PRINTS Metabotropic glutamate GPCR signature 162 181 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vvi18g0076 964 PRINTS Metabotropic glutamate GPCR signature 181 197 IPR000337 GO:0004930|GO:0007186|GO:0016020
Vvi18g0076 964 MobiDBLite consensus disorder prediction 929 951 - -
Vvi18g0076 964 Pfam Ligand-gated ion channel 839 871 IPR001320 GO:0015276|GO:0016020
Vvi18g0076 964 MobiDBLite consensus disorder prediction 916 964 - -
Vvi18g0076 964 CDD GluR_Plant 496 838 - -
Vvi18g0076 964 FunFam Glutamate receptor 609 739 - -
Vvi18g0076 964 Gene3D - 608 744 - -
Vvi18g0076 964 Gene3D - 80 426 - -
Vvi18g0076 964 Pfam Receptor family ligand binding region 80 436 IPR001828 -
Vvi18g0076 964 SMART GluR_14 499 840 IPR001320 GO:0015276|GO:0016020
Vvi18g0076 964 FunFam Glutamate receptor 177 330 - -
Vvi18g0076 964 FunFam Glutamate receptor 735 842 - -
Vvi18g0076 964 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 62 925 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0076 Vvi-Chr18 697127 703782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0076 31 936 Ion Channels AT1G42540 65.792 0.0 1264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0076 K05387 - vvi:100258104 1900.95