Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0074 ATGAAACGTTCTTTGATCTTTCTTCTGTGGTTCATCTCCATATCGGGCGTTCTCGCAATCTCAACGAAGCCGGAGACCTCCCTCTTGAATCTCGACAGCAAGGGTTTCGATATCTTGAAGGCCAATTCCATAGTGCCACAAGCGCCTAAAAATGATATAGCGCTAGTGGCTGCTTTAGATGGGACAATTTATCTCGTGGAGGCTAGTTCGAGGAAAATACTGTGGTCGTTCGCGTCTGGTTCATCTATCTATTCTTCGTATCAGGCTTTTCTTGATGGTGATAACGACAAGCAGCTGAGTACTGACTTCTTTATAGATTGTGGAGATGATTGGGAACTGTACAGGCATAACATTAGCTTCGGAAAAAGGGAAAAACTTCTATTGACTCCTGAAAAATATGTTGAAGGTGCGCCTTATGTATCAAAGGATGGAGTCACAGTGGGATCAAAGAAAACCACAGTATTTCTTGTTGACGCCAAATCTGGAACAATTATTAACACTTTTAGATCAGATGCTTCTCCTTTGATAGGAGGGTTTCAAAGTGATGAAGAAAACCCTATTCTATCTAGGGAAGAGATTGAAGAATTGATAGAGCCTGGTGATGTGGATTTGCAGAAAGTTGAGCTGCCACTTTACATCATGAGGACAGATTATGTACTGCAGCATTTCTCTCCAACTTCTGGCAAGGTGTTGTGGAATGTAAAGTTTGCTGATATTGAGGCTGTTTTTCAGTGTCCAGGGACTGAGATTGGTTCAGAATATATGAGTGATATTGAGTCTCCATTGCATTGTCAGACAAGGGCTTCTGTATACCGAATCCGTGAGCCTAGCTTGTTAGATTCTTTTCCCATGCATGATAGACTACCTAAGACTCTTCCTGCTGTGGAAGTGCTCTCTCTTCCTGCTTCTGAACCCAAATCCCATAGCTTGTTAGATTCTTTTCCCATGCATGATAGACTACCTAAGGCTCTTCCTGCTGTGGAAGTGCTCTCTCTTCCTGCTTCTGAACCCAAATCTCTTTCACAGCCTGTTGGCAGGTTACCTGGACCTCATCACCTTGGCCAAGGCAAACCACTGCTTGCATTGCCCCTTTCTGAGGGGACTTTGAGTGTTCATGGTGGTGATGCTAGTGAAATGGATATCATGAGTATTGTTTCTGACAATATTGAGAAACTTGGAATATGGGCTGCCCCACTACTGTTCATTGTTGGCTTCATCATTTACCAATTTTTTGCAGTTCGAGAACCTGGCAAATCAAGGCCCAAGGATTCTAAAGTACAAGGTATCAGTCCCAAAAAGAAGAAAGCTCGGAAATCAGTAATCAATAAGAACAATGCCAGTAATGAGAAAAGGCATGGAAATATCTCACATGAGAGTAAGGTTGCAGACAATAATGGACTTTCACAAGTCGAGAGAAATGAAATAAAATTGGAGTTGAACTCTAATAGTCTTGCTGATGTTCATGTAGGCGAACGCAAGATTGGTAAGATGCTTGTATCTAAGAAAGAAATTGCTAAGGGAAGCAACGGTACCATTGTACTTGAGGGAATTTATGATGGCCGTCCAGTAGCTGTTAAACGCCTTGTGCGGACACATCATGATGTGGCTTTGAAAGAAATTCAGAATCTTATTGCATCAGATCAGCATCCAAATATTGTTCGATGGCATGGAGTGGAGTATGATCAAGATTTTGTTTATCTCTCTCTGGAACGCTGCAATTGTAGCTTAAGTGATTTGATTTATTTATGCTCCGATTCTCAAGATCAACTAGTTAACCAGGACTGGGATTCCAACATCTTGAATGAGTATATTGTTCGATTACATTCAATAATGGATCCAAACAAGGATTTTGAATTATGGAAGACTAATGGATATCCCTCTCCTCAGTTGTTAAAATTGATGAGGGATGTGGTCTCTGGGCTAGCCCATTTGCATGAACTTGGAATTATACATCGCGACCTAAAGCCTCAAAATATTTTGATAATCATCAAGGGGAAATCCTTATCTGCAAAACTTTCAGATATGGGTATCAGCAAGCGTCTTCTTGGGGATATGTCTTCCTTAACTCACCATGGTACTGGTTATGGGAGTTCAGGTTGGCAAGCACCTGAACAACTTCGCCATGGACGCCAAACACGTGCAGTGGATTTATTTAGCTTGGGCTGTGTTCTTTTTTTTTGTCTTACGGGGGGTAAACACCCATATGGTGACAATCTTGAACGTGATGTGAATATTGTGAATAACAGGAAAGACCTATTCTTAATAGAGAATATTCCTGAAGCTGTGGATCTTTTCTCTCTTCTCCTAGAGCCTGACCCAGATTTAAGGCCAAAGGCCATGGACGTGTTGCATCATCCTTTCTTTTGGAGTTCTGAAATGCGACTTTCATTTCTTCGAGATGTCAGTGATCGTGTGGAATTGGAAGACAGGGAGAATGAATCCCAACTCCTAAAACAATTAGAAAGCATTGGAACATTGGCTTTGAATGGGAAATGGGATGAAAAGATGGAAGGTGCATTCATCAATAACATTGGCCGCTACAGGCGCTACAAATTTGATAGTGTCCGTGATTTACTGAGAGTCATACGAAACAAGTTAAATCACTACAGGGAGCTTCCTTCAGATATCCAGGAAATTTTGGGCCCGGTTCCTGAAGGATTCAATTTATATTTCTCGAGTCGATTTCCAAGATTCTTAATCGAGGTTTATAAGGTGATACACACACACTGTAGGGAGGAAGAATTCTTTCAAAAGTATATTCAAAGAAATCTTATCTAA 2778 0.4122 MKRSLIFLLWFISISGVLAISTKPETSLLNLDSKGFDILKANSIVPQAPKNDIALVAALDGTIYLVEASSRKILWSFASGSSIYSSYQAFLDGDNDKQLSTDFFIDCGDDWELYRHNISFGKREKLLLTPEKYVEGAPYVSKDGVTVGSKKTTVFLVDAKSGTIINTFRSDASPLIGGFQSDEENPILSREEIEELIEPGDVDLQKVELPLYIMRTDYVLQHFSPTSGKVLWNVKFADIEAVFQCPGTEIGSEYMSDIESPLHCQTRASVYRIREPSLLDSFPMHDRLPKTLPAVEVLSLPASEPKSHSLLDSFPMHDRLPKALPAVEVLSLPASEPKSLSQPVGRLPGPHHLGQGKPLLALPLSEGTLSVHGGDASEMDIMSIVSDNIEKLGIWAAPLLFIVGFIIYQFFAVREPGKSRPKDSKVQGISPKKKKARKSVINKNNASNEKRHGNISHESKVADNNGLSQVERNEIKLELNSNSLADVHVGERKIGKMLVSKKEIAKGSNGTIVLEGIYDGRPVAVKRLVRTHHDVALKEIQNLIASDQHPNIVRWHGVEYDQDFVYLSLERCNCSLSDLIYLCSDSQDQLVNQDWDSNILNEYIVRLHSIMDPNKDFELWKTNGYPSPQLLKLMRDVVSGLAHLHELGIIHRDLKPQNILIIIKGKSLSAKLSDMGISKRLLGDMSSLTHHGTGYGSSGWQAPEQLRHGRQTRAVDLFSLGCVLFFCLTGGKHPYGDNLERDVNIVNNRKDLFLIENIPEAVDLFSLLLEPDPDLRPKAMDVLHHPFFWSSEMRLSFLRDVSDRVELEDRENESQLLKQLESIGTLALNGKWDEKMEGAFINNIGRYRRYKFDSVRDLLRVIRNKLNHYRELPSDIQEILGPVPEGFNLYFSSRFPRFLIEVYKVIHTHCREEEFFQKYIQRNLI* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0074 925 MobiDBLite consensus disorder prediction 417 464 - -
Vvi18g0074 925 SMART PGNneu 853 907 - -
Vvi18g0074 925 Pfam Ribonuclease 2-5A 794 919 IPR010513 GO:0004540|GO:0006397
Vvi18g0074 925 ProSiteProfiles Protein kinase domain profile. 498 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0074 925 SUPERFAMILY Protein kinase-like (PK-like) 501 798 IPR011009 -
Vvi18g0074 925 FunFam Inositol requiring 1-1 37 253 - -
Vvi18g0074 925 CDD RNase_Ire1 792 919 - -
Vvi18g0074 925 Gene3D KEN domain 791 924 IPR038357 -
Vvi18g0074 925 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 792 924 - -
Vvi18g0074 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Vvi18g0074 925 ProSiteProfiles KEN domain profile. 791 922 IPR010513 GO:0004540|GO:0006397
Vvi18g0074 925 SMART serkin_6 498 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0074 925 CDD Luminal_IRE1_like 53 454 - -
Vvi18g0074 925 Gene3D - 40 248 IPR015943 GO:0005515
Vvi18g0074 925 SMART ire1_9 138 169 IPR018391 -
Vvi18g0074 925 SMART ire1_9 47 78 IPR018391 -
Vvi18g0074 925 Pfam Protein kinase domain 500 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0074 925 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 612 790 - -
Vvi18g0074 925 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 48 236 IPR011047 -
Vvi18g0074 925 PANTHER IRE1-RELATED 127 923 IPR045133 GO:0004521|GO:0004674|GO:0030968
Vvi18g0074 925 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 490 570 - -
Vvi18g0074 925 Gene3D Phosphorylase Kinase; domain 1 483 570 - -
Vvi18g0074 925 Gene3D Transferase(Phosphotransferase) domain 1 606 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0074 Vvi-Chr18 686243 690429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0074 505 792 MAP Kinase Kinase Gene Family AT5G40440 28.713 1.23e-17 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Vvi18g0074 Pkinase 1.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0074 K08852 - vvi:100247854 1831.61