Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0065 ATGACTCATCCGTCTAGATTCCTCGGCGGCGTGAACTCCTCGGCGACCGCATCACAGGAGTCCGCCGCCGTCGACTCCGACTTCGTCGTCATCCTCGCCGCGCTCCTCTGCGCCCTAATCTGCGTCCTCGGCCTCGTTGCAGTAGCTCGCTGCGCCTGGCTCCGCCGGATCTCCGGCGCAGCGAACCTCCCGGGCGGTTCCGCTCCTCAAACTCCGGCCAACAAAGGCTTGAAGAAGAAGATCCTCCGATCCCTCCCGAAGGTTACCTACGCAGCCGAGACCGCCGGAAACCTAACGGACTGCGCTATCTGCTTGACTGAATTCGTCGGAGGAGACGAAATCCGAGTGCTGCCGCAGTGCGGGCACGGGTTCCACGTCGGATGCATCGACACATGGCTAGGATCTCATTGTTCTTGCCCTTCGTGCAGGCAGATTCTGGTTGTTGCCAGATGTCAGAAGTGTGGAGGAGTTCCAGCAAGCTCCAGCAGCACCGGAGCTGAGACGGAGTCCAGATTGAAGGAGAGAGAAGACGATGTGAATAGAGAAGCATTTGACTGCGCCCACGGAATCGAGAAAAGGAATGCAGTGGTGGTGAGTCCTGTAAATGGAGTCGGTGGTTCCTTCTTCTCCACGTGTGTTCACGCCTTGGGCTCTTGCGGTGCGTATTCTAATCCCCATTGA 681 0.5844 MTHPSRFLGGVNSSATASQESAAVDSDFVVILAALLCALICVLGLVAVARCAWLRRISGAANLPGGSAPQTPANKGLKKKILRSLPKVTYAAETAGNLTDCAICLTEFVGGDEIRVLPQCGHGFHVGCIDTWLGSHCSCPSCRQILVVARCQKCGGVPASSSSTGAETESRLKEREDDVNREAFDCAHGIEKRNAVVVSPVNGVGGSFFSTCVHALGSCGAYSNPH* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0065 226 CDD RING-H2_EL5-like 100 143 - -
Vvi18g0065 226 SUPERFAMILY RING/U-box 81 149 - -
Vvi18g0065 226 SMART ring_2 101 142 IPR001841 -
Vvi18g0065 226 Pfam Ring finger domain 100 143 IPR001841 -
Vvi18g0065 226 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Vvi18g0065 226 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 18 155 - -
Vvi18g0065 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 147 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0065 Vvi-Chr18 626505 627498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0065 6 180 C3H Transcription Factor Family AT1G20823 58.824 1.69e-66 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0065 - - vvi:100266753 438.343