Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0058 ATGTTGGCTATGGAGGAAGTTCTGTGTGAGCTGAGCAGAGAGGACATAAATGAGCAAGGTTTGCCTCCTGGGTTTAGGTTCCACCCCACTGATGAAGAACTGATAACCTTTTATCTGGCTTCGAAGGTGTTTAATGGGAGTTTCTGTGGTGTGGAGATTGCTGAGGTTGACCTCAACAGATGCGAGCCTTGGGAGCTTCCAGATGTAGCAAAGATGGGAGAAAGAGAGTGGTATTTCTTCAGTTTAAGGGACAGAAAGTACCCAACAGGGTTGAGAACAAACAGGGCAACTGGAGCTGGGTATTGGAAAGCAACAGGAAAAGATAGAGAAGTGCACAGCGCCTCAAGCGGAGCCTTACTTGGGATGAAGAAAACCCTAGTTTTCTACAAGGGAAGAGCACCCAGAGGCGAGAAAACCAAGTGGGTTATGCACGAGTACCGCCTCGACGGTGACTTCTCCTACCGCCACACGTGCAAGGAGGAATGGGTGATTTGCAGAATATTTCACAAAACTGGGGAGAAGAAGAACCCGATGTTCCAAGGGCAGGCGTATCTGCTGGGGAGTTCAGCAGCAGCAGCAGTAGCCACTAGTTCGTTGCCTGCGTTGCTGGAAAGCCAAACAACACTGTTGGAGAGTCAATCTCACCCCACAATGCAAGGTGGTATCTCAAGCTCTTTTCTGGTTCATCACCACCATGACCAAGAAAGCAATGAGCTGAAGGCCCTGATAAACCCAGTTTTGTCCCAGTCTCCTTTGGCGTTTCCAATAAATAGTGGGTTCCAGAGCTGCTCCTTTTCAACAACTCCCACCACCAACATCCCAAACACGAACAACATTAATAGCACCACCGGCAACAACAACCCATCAACATCCATCCTCTTCAAGTCCCTCCTCTCACATCAGGAATGCAGTTTGAAGGAACAGACCACTATTCCGAAACAGTGCAAGACAGAGGCCAACTTTTCCCATTTCCAACTACCTGATGCTAACATGCACTGGGTGGACAGGATGAACTCGAACCTGCATCAAAATCCCTTGTTTTTTGAGATGGATTATTGTAGCGGTGGTGTATTGGGGTTCACAGCAGCAACTGCTACTGGTGGTGGTGGTGGTGGTGGTGGTGCTTCTGCTGCTGCTACTTCCGCTGCTGTTGCTTCTGCTGCAGAAACTGTTCATGAGATGTCCACTTCAATTGCTTTCAACAGGGCCGGCTTTCAGATGATGGTAGATTTTCCCATCAGAGTCCCCGGAGGAGAATCTTGGCCATTGGATCCTTGA 1278 0.489 MLAMEEVLCELSREDINEQGLPPGFRFHPTDEELITFYLASKVFNGSFCGVEIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVHSASSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSYRHTCKEEWVICRIFHKTGEKKNPMFQGQAYLLGSSAAAAVATSSLPALLESQTTLLESQSHPTMQGGISSSFLVHHHHDQESNELKALINPVLSQSPLAFPINSGFQSCSFSTTPTTNIPNTNNINSTTGNNNPSTSILFKSLLSHQECSLKEQTTIPKQCKTEANFSHFQLPDANMHWVDRMNSNLHQNPLFFEMDYCSGGVLGFTAATATGGGGGGGGASAAATSAAVASAAETVHEMSTSIAFNRAGFQMMVDFPIRVPGGESWPLDP* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0058 425 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Vvi18g0058 425 FunFam NAC domain-containing protein 100-like 30 174 - -
Vvi18g0058 425 ProSiteProfiles NAC domain profile. 21 170 IPR003441 GO:0003677|GO:0006355
Vvi18g0058 425 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 276 - -
Vvi18g0058 425 Pfam No apical meristem (NAM) protein 22 148 IPR003441 GO:0003677|GO:0006355
Vvi18g0058 425 SUPERFAMILY NAC domain 15 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0058 Vvi-Chr18 589627 592083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0058 1 255 NAC Transcription Factor Family AT1G76420 62.547 1.69e-110 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi18g0058 NAM 8.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0058 - - vvi:100256459 790.801