Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0056 ATGGCGTTAAAAGTCCTTTCTGCCCTTGACACTGCTAAAACCCAGTATTACCACTTCAAGGCCATCATCATCGCCGGCATGGGTCTCTTTACCGACGCCTACGACCTCTTCTGTATTCCTCCCATCATGAAACTGATCGGACGGATCTACTACGAGGATGAGCCAAACCTTGAGAAGCAATACGAAACCCCAGCTTTTGTGGTCTCCCTCTTGGTAGGGCTGGCGCTGCTGGGGACTGTGATTGGTCAGCTCGTCTTCGGCCGCCTCGGTGATCAGATCGGGAGGCGGCGCGTATACGGGCTCTCATTGATGCTCATGGTGCTGAGCTCCATCGGATGCGGCTTCTCCATCTGCAGGACTCGGAACTGCGTGTTGGGGACTTTGGGATTCTTCAGGTTCATGCTCGGCATCGGGATTGGCGGTGATTATCCGTTGTCGGCGACGATCATGTCGGAGTTCGCCAACAAGAAGACGCGTGGCTCGTTTATCGCCGCTGTTTTCTCGATGCAGGGCTTTGGGATTCTCGTCAGCTCGACCGTAACGATGGTGGTTTGTTCGATATTCAATGCTGCGTCGAATGCACAGTACAATCACACGCCGGAGGAGGCGGACTTAGTATGGCGGCTGATTCTGATGTTCGGCGCAATTCCGGCTGCGATGACGTATTATTGGCGTATGATGATGCCTGAAACTGCCAGGTACACGGCTCTGGTGGAACAAAATGTCCTTCAAGCAGCAAAGGACATGGAGAAAGTGTTGGATGTTTCAATGAGTCAGATTGCAGAAGAGTACGAAATCCCACCAAATCCACCTTCTTATCCTCTCTTCTCCAAGGAATTCTTCCGTCGCCATGGCCGAGATCTCTTCTCTTGCGCCACTACTTGGTTTCTAGTGGATGTTGTCTTCTACAGCAGTAATCTTTTCCAGTCTCAGATATACAACGAGTACCTCTCAAAGAAGGAAGACATGAATGCATATACAGAGGCCTTTGAGGTTGCTAGAGTCCAAGCACTCATTGCAGTTTGTTCAACAATTCCCGGATACTGGGCCACTGTCTCTTGCATTGATCGCATTGGAAGGGTTAAAATTCAAATGATGGGGTTCCTCTTCATGGGCCTTGGCTTACTGGCAATTGGGATACCTTACTACTCTACCTGGGATGAAGGCATGGAGAATGAAGGCAAGAAATTTGGTTTCATGCTCCTTTATGGCCTCACCTTCTTCTTTGCCAACTTTGGACCAAACACAACCACATTCATAGTTCCTGCTGAGCTTTTCCCTGCAAGATTCAGATCAACCTGTCATGGCATTTCTGGGGCTGCTGGAAAGGTGGGGGCAATTATCGGGTCTGTGGGCTTCCTGTGGGCTTCTCACAATAAGAAAGAGAAAGGGTATCCCAAAGCAATTGGGATGAGATACTCTTTGGTGATTCTGGCTGGGGTCTGTTTCATGGGAGTGGTGGTAACCTATTTTTTCACCCGTGAAACCAAGGGAAGATCATTGGAGGAGAATGAGATTGAGAATGAGAATGAAGATGGAAGCAATGACCACGTCCTCCTCAGGTGTTTCACAAATTGCAGTGTGCAGTCACATTCATCAATTAATGAAGGAGCAGCTGCATAG 1623 0.4923 MALKVLSALDTAKTQYYHFKAIIIAGMGLFTDAYDLFCIPPIMKLIGRIYYEDEPNLEKQYETPAFVVSLLVGLALLGTVIGQLVFGRLGDQIGRRRVYGLSLMLMVLSSIGCGFSICRTRNCVLGTLGFFRFMLGIGIGGDYPLSATIMSEFANKKTRGSFIAAVFSMQGFGILVSSTVTMVVCSIFNAASNAQYNHTPEEADLVWRLILMFGAIPAAMTYYWRMMMPETARYTALVEQNVLQAAKDMEKVLDVSMSQIAEEYEIPPNPPSYPLFSKEFFRRHGRDLFSCATTWFLVDVVFYSSNLFQSQIYNEYLSKKEDMNAYTEAFEVARVQALIAVCSTIPGYWATVSCIDRIGRVKIQMMGFLFMGLGLLAIGIPYYSTWDEGMENEGKKFGFMLLYGLTFFFANFGPNTTTFIVPAELFPARFRSTCHGISGAAGKVGAIIGSVGFLWASHNKKEKGYPKAIGMRYSLVILAGVCFMGVVVTYFFTRETKGRSLEENEIENENEDGSNDHVLLRCFTNCSVQSHSSINEGAAA* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0056 540 Pfam Sugar (and other) transporter 23 504 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vvi18g0056 540 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 19 502 - -
Vvi18g0056 540 Gene3D MFS general substrate transporter like domains 17 521 IPR036259 -
Vvi18g0056 540 FunFam Inorganic phosphate transporter 1-6 17 518 - -
Vvi18g0056 540 SUPERFAMILY MFS general substrate transporter 9 505 IPR036259 -
Vvi18g0056 540 CDD MFS_PhT 22 496 - -
Vvi18g0056 540 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 497 IPR020846 GO:0022857
Vvi18g0056 540 ProSitePatterns Sugar transport proteins signature 2. 134 159 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0056 Vvi-Chr18 579173 581849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0056 3 521 Inorganic Solute Cotransporters AT1G76430 61.754 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0056 K08176 - vvi:100251317 1064.29