Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0051 ATGTCAGGATCTGAAACTGGAATCATGACTACCAGAGAGCCCTTCAGCATGGGTCTCCAGAAAAATGCGGTACCGTCACAGCCGGTGATACAAAACATGCGCTTAGCCTTCAGTCCAGACGGAGCAGCTGTGTACAAGCCCGTTTCCGGGACCTCCCCGCCGTACCAGTCTTCCGGCGGTACCGGTGGAGATGGTTCCACCGGCGGCGCCATCATACCTCACGGCCTTAACATGAATATGGGGAGTGAGCCCTTGAAGAGGAAGAGAGGGAGGCCAAGGAAATACGGCCCAGATGGGACCATGGCACTGGCGTTGTCACCTGCTCCTTCTGGTGTGAACGTATCTCAGTCCGGTGGGGCATTTTCTTCTCCACCTGCTTCGGCCGGATCAGCCTCACCTTCTTCCTTGAAGAAAGCAAGAGGCCGACCACCCGGTTCCAGCAAGAAACAGCAAATGGAAGCTCTTGGATCTGCGGGAGTTGGATTTACACCTCATGTTATCACAGTGAAAGCTGGAGAGGATGTATCATCAAAAATAATGTCATTTTCTCAGCATGGTCCAAGGGCTGTTTGCATCCTATCAGCAAATGGTGCCATCTCTAATGTGACTCTCCGCCAACCAGCAACATCTGGTGGCACTGTAACTTATGAGGGACGGTTTGAAATTCTCTCCCTTTCTGGTTCATTTCTGCTCTCAGAAAATGGTGGTCAGCGAAGCAGAACTGGGGGATTAAGCGTGTCATTGTCTGGTCCAGATGGCCGTGTTTTGGGTGGTGGCGTAGCAGGTCTTTTAACAGCTGCATCCCCTGTTCAGGTAGTTGTGGGTAGTTTTATTGCAGATGGCCGCAAGGAATCAAAGTCAGCAAGCCAAGTGGAACCCTCATCAGCCCCACCAAAGATTGCCCCAGTTGGTGGTGGGGGTGGGGTAACAGGAACAAGCAGCCCCCCGTCTCGTGGGACACTGAGTGAGTCATCTGGCGGACCTGGGAGCCCCCTTAACCAGAGCACGGGAGCCTGCAATAACAGTAATCCACCAGGAATGACGAGCATCCCATGGAAGTAG 1062 0.532 MSGSETGIMTTREPFSMGLQKNAVPSQPVIQNMRLAFSPDGAAVYKPVSGTSPPYQSSGGTGGDGSTGGAIIPHGLNMNMGSEPLKRKRGRPRKYGPDGTMALALSPAPSGVNVSQSGGAFSSPPASAGSASPSSLKKARGRPPGSSKKQQMEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGRKESKSASQVEPSSAPPKIAPVGGGGGVTGTSSPPSRGTLSESSGGPGSPLNQSTGACNNSNPPGMTSIPWK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0051 353 MobiDBLite consensus disorder prediction 310 353 - -
Vvi18g0051 353 MobiDBLite consensus disorder prediction 49 154 - -
Vvi18g0051 353 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Vvi18g0051 353 Gene3D - 164 292 - -
Vvi18g0051 353 SMART AT_hook_2 137 149 IPR017956 GO:0003677
Vvi18g0051 353 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Vvi18g0051 353 MobiDBLite consensus disorder prediction 282 353 - -
Vvi18g0051 353 MobiDBLite consensus disorder prediction 50 64 - -
Vvi18g0051 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
Vvi18g0051 353 CDD DUF296 163 277 IPR005175 -
Vvi18g0051 353 MobiDBLite consensus disorder prediction 109 134 - -
Vvi18g0051 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 49 337 IPR039605 GO:0003680
Vvi18g0051 353 FunFam AT-hook motif nuclear-localized protein 1-like 164 295 - -
Vvi18g0051 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0051 Vvi-Chr18 540369 544705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0051 1 353 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 56.757 1.57e-107 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0051 - - vvi:100263332 600.127