Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0048 ATGGCGTATCAGCCGATTCCGGGTCCGAGTTCTGGGTCCAGTTCGAGTTCCGGGTTTCAATTCTTGAATTCCCCTTTTGGAGATACTACGTACACCAAGGTGTTTGTGGGAGGATTGGCGTGGGAGACTCAGAGCGAGACTATGCGCCGATACTTTGAGCAGTTCGGTGAGATCCTTGAGGCCGTTGTCATCACCGATAAGAACACTGGCCGATCGAAGGGTTATGGTTTTGTGACTTTCCGGGATCCCGAATCTGCAAGGAGAGCCTGCCTGGATCCAGCTCCAATTATTGATGGTAGACGGGCTAATTGTAATTTGGCTTCACTTGGACGACCCCGACCATCTATGTCTTATGGACGTTTGAGACCAGTCACCCCTTACCTTGGAAGTGTGCCAGCCACCCGGGGAAGCTATGTTGGAAATTTTGGCTACCAGCAACCAGTTTCTTACAGTTACCAGCAAGGATTTATGTACCCTTCATATGGATATGCAGCATATGGACCTGAATATGTCTATCCACAGGGTGTTTACAATCCTTATCCAGGCCAGCAATACCTTCAGATATATGGGGTGCCTGGGACGGTTAATACAGCTATTTATCCTTATGGACAATTGGGTCAGACTCTTCCCAGCAGTCATGGTTATACAACGGTACAGGGTTATGCAATGCCAGGTCATCAGTTCATGCAATTTGGTGGGTCCAGTGTCAATGCCATATCAACATCGCCTATTCCAACAATTCAGGCACCCTATCCTACAGGTATAGCCGCACCTGTTCCAGCACAACCACAGTTTATAGTTCCTGCTCATTCTCCTCAGTTCATTCAAGGTAGCGGTCCTGACCAAACAACTGGGTGA 858 0.4848 MAYQPIPGPSSGSSSSSGFQFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACLDPAPIIDGRRANCNLASLGRPRPSMSYGRLRPVTPYLGSVPATRGSYVGNFGYQQPVSYSYQQGFMYPSYGYAAYGPEYVYPQGVYNPYPGQQYLQIYGVPGTVNTAIYPYGQLGQTLPSSHGYTTVQGYAMPGHQFMQFGGSSVNAISTSPIPTIQAPYPTGIAAPVPAQPQFIVPAHSPQFIQGSGPDQTTG* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0048 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 89 IPR000504 GO:0003723
Vvi18g0048 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Vvi18g0048 285 SMART rrm1_1 33 105 IPR000504 GO:0003723
Vvi18g0048 285 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Vvi18g0048 285 Gene3D - 9 122 IPR012677 -
Vvi18g0048 285 SUPERFAMILY RNA-binding domain, RBD 31 145 IPR035979 GO:0003676
Vvi18g0048 285 PANTHER BOULE-RELATED 10 250 - -
Vvi18g0048 285 CDD RRM_RBM24_RBM38_like 32 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0048 Vvi-Chr18 525430 528843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0048 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 1.14e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0048 - - vvi:100258188 578.556