Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0041 ATGAAGCTATATACAAGGGCGCTGCATTATGAGGTTATTCAGTTGAATGCAAATGATCATTGCTTGGGTTACAGTTTGTTGTTCATCTTCTGGTTTTGGGGTGTTTGGATTGTATTGAGAGATCAGATCGAGGCAGAAGGAGAGGAAGGAAAAAGAAAACTGGCAAATAATTGGTGGGAGAGAGTAGATGTGGGGATGGAGGGTTATGAACCAGGCTCAGGTTCTCGCTACGTCCACCAGCTACTCGGACCTGAACTGCACTTGCAGAGACCGTCATCGCTTCCACAACATCAAGCCACTCAACAACCATCGGATTCTAGGGACGAGTCACCAGATGATCAGGAGCAGAGGGCGGACACCGAGGAGGCCGCCGCTGCTAGTTCTGGTGGAGCCACCACCTCTTCAAATCGCCGCCCTCGAGGTCGTCCTCCTGGCTCCAAGAACAAGCCCAAGCCACCCATAATCGTAACGCGCGATAGCCCAAATGCCCTCCGGTCGCATGTACTTGAAGTTGCCGCTGGCGCTGACGTCATGGAGAGTGTGTTGAATTACGCCCGGCGCCGTGGGAGAGGCGTATGTGTTCTCAGCGGTGGCGGCACAGTCATGAACGTGACGCTGCGTCAGCCTGCGTCTCCTGCAGGGAGCATAGTGACGCTGCACGGCAGGTTCGAGATACTCTCATTGTCAGGAACCGTGCTTCCTCCACCGGCGCCGCCGAGTGCTGGAGGCCTTTCTATATTTTTGTCCGGTGGTCAGGGTCAGGTAGTTGGAGGAAGCGTGGTGGGTCCCTTGATGGCTTCAGGTCCAGTTGTTTTGATGGCTGCGTCGTTTGCCAACGCTGTCTTTGAGCGTTTACCACTGGAGGAGGAAGAGGGATTGAAATGGAAGGAACCCAGGGTTTATTTAATTATGCATGTGTTTCCCTCTCTTCTGCAGTCAGCATTTCTATAG 951 0.5321 MKLYTRALHYEVIQLNANDHCLGYSLLFIFWFWGVWIVLRDQIEAEGEEGKRKLANNWWERVDVGMEGYEPGSGSRYVHQLLGPELHLQRPSSLPQHQATQQPSDSRDESPDDQEQRADTEEAAAASSGGATTSSNRRPRGRPPGSKNKPKPPIIVTRDSPNALRSHVLEVAAGADVMESVLNYARRRGRGVCVLSGGGTVMNVTLRQPASPAGSIVTLHGRFEILSLSGTVLPPPAPPSAGGLSIFLSGGQGQVVGGSVVGPLMASGPVVLMAASFANAVFERLPLEEEEGLKWKEPRVYLIMHVFPSLLQSAFL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0041 316 Gene3D - 164 296 - -
Vvi18g0041 316 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 102 292 IPR014476 GO:0003680
Vvi18g0041 316 CDD DUF296 165 248 IPR005175 -
Vvi18g0041 316 MobiDBLite consensus disorder prediction 90 161 - -
Vvi18g0041 316 MobiDBLite consensus disorder prediction 126 141 - -
Vvi18g0041 316 FunFam AT-hook motif nuclear-localized protein 164 292 - -
Vvi18g0041 316 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 291 - -
Vvi18g0041 316 MobiDBLite consensus disorder prediction 91 105 - -
Vvi18g0041 316 Pfam Plants and Prokaryotes Conserved (PCC) domain 165 278 IPR005175 -
Vvi18g0041 316 ProSiteProfiles PPC domain profile profile. 161 299 IPR005175 -
Vvi18g0041 316 MobiDBLite consensus disorder prediction 106 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0041 Vvi-Chr18 474843 476501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0041 68 289 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 60.924 9.08e-75 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0041 - - vvi:100242785 380.563