Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0040 ATGGATATAGGCGAGATGGAGGATGGCCAAAAGATGGAGCGAGAGTCGGATATCAACCTGATTGATGCCAAAATCGGAGAACAAGAGCCTCCTCCCTCGGCGGAGGATAAAGACCCCGGTGAGAATGTGCAATCCCCTCCTCCTCCCCCCTCGGCTAAGGATGAAAACCCTGGTGAGAATTTGAAATCGGCTCCTTCTCAGGCAGCCTCTGATGTTAAGAGTGATGAATCACCCATTACCGATCATCCAACCGATGTTAAAACCATTGCTGAGGTTGAAACCAATGTTGATGCTTCTGGTGTTAATGATAATGCCCCGAGAGCAAATGAGCTTGAAGCTGTGACACCCCAGCCACTAGCAAAGTCTGCTATTGCAAAAGATGAAGATGGGAGTGAAGGGGAGTTGAAGAATGAGTTCAATGATAAAGCGGTTGCTGATGCCATCGAATTGGGGACAGGTGAGGAGGTTGCCGATTTTGCTAAGGAGGTGGAGAGTTTCTATAGGGAGCATTCCCTGGATTTTAAACACCCCAAGTTTTACGGAGAGCCATTAGATTTGCTAAAGTTATGGAAAGCTGTAACTAGATTGGGAGGCTATGATCAGGTGACTGCATCCAAGTTGTGGCGACAAGTGGGAGACTCTTTCCATCCCCCCAAGACCTGCACTACAGTCTCTTGGACATTCCGCATTTTCTATGAGAAGGCACTTCTGGAATATGAAAGGCATAAAAGGAACAGGGGTGAGCTTCAACCCTCGTCTGTACCCATCTCTGAAACAAAAACTGAAGAAAAAGAGGGAAGTGGTTACCAAGCTTCAGGAACAGGCAGGGCACGAAGGGATGCTGCAGCTCGTGCTATGCAGGGTTGGCATGTTCAGCGTCTCTTTGGATATGGTGAGGATAAGAGCTTCAATTCTGCACAAAAGCGTGAAAGACCACTCAAAAGCATTGACTCAGGTTTACATAAACACAAGAAACCAACTCTTATGGAGGATGTCGAAAAAGCTGAAGCAGCTAAGCAGTTGAGATCCATGACCGTTTCTATATTTAGTTTATTATTCTTTTTATTCTAG 1071 0.4622 MDIGEMEDGQKMERESDINLIDAKIGEQEPPPSAEDKDPGENVQSPPPPPSAKDENPGENLKSAPSQAASDVKSDESPITDHPTDVKTIAEVETNVDASGVNDNAPRANELEAVTPQPLAKSAIAKDEDGSEGELKNEFNDKAVADAIELGTGEEVADFAKEVESFYREHSLDFKHPKFYGEPLDLLKLWKAVTRLGGYDQVTASKLWRQVGDSFHPPKTCTTVSWTFRIFYEKALLEYERHKRNRGELQPSSVPISETKTEEKEGSGYQASGTGRARRDAAARAMQGWHVQRLFGYGEDKSFNSAQKRERPLKSIDSGLHKHKKPTLMEDVEKAEAAKQLRSMTVSIFSLLFFLF* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0040 356 ProSiteProfiles ARID domain profile. 153 244 IPR001606 GO:0003677
Vvi18g0040 356 SMART bright_3 154 245 IPR001606 GO:0003677
Vvi18g0040 356 Pfam ARID/BRIGHT DNA binding domain 158 240 IPR001606 GO:0003677
Vvi18g0040 356 MobiDBLite consensus disorder prediction 1 22 - -
Vvi18g0040 356 SUPERFAMILY ARID-like 148 253 IPR036431 GO:0003677
Vvi18g0040 356 FunFam AT-rich interactive domain-containing protein 3 153 252 - -
Vvi18g0040 356 MobiDBLite consensus disorder prediction 305 327 - -
Vvi18g0040 356 MobiDBLite consensus disorder prediction 247 277 - -
Vvi18g0040 356 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 39 344 IPR045147 GO:0006357
Vvi18g0040 356 Gene3D - 154 253 IPR036431 GO:0003677
Vvi18g0040 356 CDD ARID 157 240 - -
Vvi18g0040 356 SMART ARID_2 150 240 - -
Vvi18g0040 356 MobiDBLite consensus disorder prediction 1 87 - -
Vvi18g0040 356 MobiDBLite consensus disorder prediction 60 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0040 Vvi-Chr18 447979 468244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0040 149 348 ARID Transcription Factor Family AT1G20910 57.488 1.51e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vvi18g0040 ARID 3.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0040 - - vvi:100265075 673.7