Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0039 ATGGAGAGAATTGAGAATCAGAAATCAGCGATGGAGGCATTTGAGAAGCTGGAGAAGGTAGGGGAAGGGACGTACGGGAAGGTGTACAGAGCGAGAGAGAGGGCAACCGGAAAGATTGTGGCACTGAAGAAGACACGCCTCCATGAGGACGATGAGGGTGTTCCTCCGACCACTCTCCGTGAGGTCTCCTTGCTTCGCATGTTATCCCGAGATCCCCATGTCGTCAGATTGATGGATGTTAAACAAAGCCTGAATAAGGAAGGGAAAACGGTTCTGTACTTGGTGTTTGAGTATATGGACACTGATCTTAAGAAGTATATCCGAAGCTTCCGCCAAACTGGGGAGAATATTCCCACAAAAACCATTAAGAGCTTGATGTACCAATTATGCAAAGGTGTTGCTTTCTGCCATGGTCATGGGGTATTGCACAGGGACCTTAAGCCTCACAATCTCTTGATGGACCGCAAGACAATGATGCTGAAAATAGCAGATCTTGGACTGGCTAGGGCGTTTACTCTTCCTATTAAGAAGTACACTCATGAGATACTGACTTTGTGGTATAGAGCCCCTGAAGTACTTTTGGGGTCTACCCATTACTCAACTGCAGTAGATATGTGGTCAGTTGGCTGTATATTTGCTGAACTAATCACAAAGCAAGCACTCTTTCCTGGGGATTCTGAACTGCAGCAGCTCCTTCATATTTTCAAGTTACTGGGCACCCCCAATGAAGAGATGTGGCCAGGAGTGACGAAACTACCAAACTGGCATGAGTTCCCCCAGTGGAGCCCAAATCAGAATCCTAAGAATTCATCATCGGCTTTTCCTAATCTGTCAGCAGCTGTTCCTAATCTGGATGAAGACGGGCTTGATCTTTTATCGAAAATGTTGAAGTATGACCCTTCAGAGAGGATTTCGGCAAAGAAAGCTATGGAACACCCTTACTTCGACGATCTGGACAAGGACTACCTTTAA 972 0.4609 MERIENQKSAMEAFEKLEKVGEGTYGKVYRARERATGKIVALKKTRLHEDDEGVPPTTLREVSLLRMLSRDPHVVRLMDVKQSLNKEGKTVLYLVFEYMDTDLKKYIRSFRQTGENIPTKTIKSLMYQLCKGVAFCHGHGVLHRDLKPHNLLMDRKTMMLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAVDMWSVGCIFAELITKQALFPGDSELQQLLHIFKLLGTPNEEMWPGVTKLPNWHEFPQWSPNQNPKNSSSAFPNLSAAVPNLDEDGLDLLSKMLKYDPSERISAKKAMEHPYFDDLDKDYL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0039 323 SUPERFAMILY Protein kinase-like (PK-like) 9 319 IPR011009 -
Vvi18g0039 323 ProSiteProfiles Protein kinase domain profile. 14 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0039 323 Pfam Protein kinase domain 14 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0039 323 SMART serkin_6 14 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0039 323 Gene3D Transferase(Phosphotransferase) domain 1 101 322 - -
Vvi18g0039 323 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Vvi18g0039 323 FunFam Cyclin-dependent kinase B2,2 10 100 - -
Vvi18g0039 323 FunFam Cyclin-dependent kinase 2 102 322 - -
Vvi18g0039 323 PANTHER CELL DIVISION PROTEIN KINASE 12 316 - -
Vvi18g0039 323 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Vvi18g0039 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0039 Vvi-Chr18 444101 446287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0039 9 318 Core Cell Cycle Gene Families AT1G76540 83.548 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vvi18g0039 Pkinase 6.3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0039 K07760 - vvi:100254782 659.833