Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0038 ATGGATTTCGAGCCTCTGAACATTGAAAATGAGGTGATGGAATTCGCCATGGGCTCTGGGGAAGAAGACAACGGTCTCGACTTAGAACACAATGATGAGTATGAAGGTTATAACGGCGAAATGATGGAGAATTCTTCTGCCGCTGGTCGGGATTCACTGGCTTTGAATGGGGACCCGAATCTCGAACCCTCGGAAGGAATGGAATTCGATTCTGAACAGGCAGCTCGAATTTTCTACAATTCATATGCGCGTCGCATCGGTTTCAGTACCCGAGTCAGCGTGTACCAACGGTCCCGTCGGGACGGCTCAATCATTTGCCGCCAAATTGTGTGCTCCCGTGAAGGGTTTCGCCGGGAGGGCGGTGAAAATCGGTCCAAGCGGCAGCGGACCGTGACTAGGGTTGGTTGTAAGGCGCAAATGACTGTGAAGAAACAGAATTCTGGGAAATGGGCTGTGACCAAACTCGTAAAAGAACATAATCATGACCTTGTGCCTCCTGATAAAGTGCATTGCCTCCGCTCGCATAGGCATGTATCGGGGCCTGCCAGAAGTCTGATTGATACTCTTCAGGCGGCTGGAATGGGCCCAAGCGGGGTGATGTCCGTGTTAATTAAGGAGTCCGGTGGGATTAATAATGTTGGTTTTACAAAAGTTGATTGCCAGAATTATATGAGTAGTAGCAGGCAGAGGACCCTTGGGAGTGGGGGTCAGCATATTTTCGACTATTTGAAGCGAATGCAGGGGGAGGATCCTGGGTTCTTTTGTGCCGTGCAAGGTGATTCTGAAAACCCAACTGGAAATATTTTTTGGGCTGATGCCAATTCTAGGGTGAATTACCAATACTTTGGGGACACTGTTACGTTTGATACAGCTTATAGAACCAACCGTTATCGGGTTCCCTTTGCCCCATTCACTGGGTGGAACCATCATGGGCAGCCTGTATTGTTTGGCTGTGCATTGCTACTTAATGAGTCAGAGTCTTCTTTCGTTTGGCTGTTTCAGACTTGGCTTGCTGCAATGTCTGATCACCATCCCCTTTCGATCACAACTGATCAGGATAGGATTATTCGAGCAGCTGTTGCACAGGTTTTCCCTGGAACCCGACACCGTTTTTGTAAGTGGAATGTATTTAGAGAAGCCCAGGAGAAATTGTTCCATGTAAATCAATCACACCTCACTTTTGAAGCAGAGTTTCAGAGGTGCATAAACTTGACAGAGACAATAGATGAGTTTGAGTCAAGTTGGGAGTCTCTACTTGAGAAATACAATCTCCTGGATAATGAATGGCTTCAATCGATGTACAATGCCCGCCAGCAGTGGGTGCCAGTTTATCTTCGTGATACATTCTTTGGGGAGATGTCAATAACCCAAGGCACTGATAGTATAAACTCATTCTTTGATGGTTATATAAATGCATCAACTAGCATTCAGGTGCTGCTTAAGCAGTATGAGAAAGCTACTGCCAGTCGGTATGAAAAAGAAGTAAAGGCAGACTATGATACAATTAACACTGCACCAGTTCTAAAAACTCCATCTCCTATGGAAAAACAAGCAGCAAACCTTTATACCAGAAAGATATTCACGCAATTTCAGGAGGAATTAGTAGAGACTCTTGCTAATCCGGCAACTGTAATTGATGATGGGGGATCAGAGGCTTTGTATCGGGTTGCAAAATTTGGGGAAGACCACAAAGCACACTTCATTAAATTCAATGTTTTTGAAAGGAAAGCTAGCTGTAGCTGCCAAATGTTTGAGTTTTCTGGTATTATCTGTAGGCACATATTGGCAGTTTTTAGAGTAACAAATGTTCTTACACTGCCATCTCATTACATCTTGAAGCGCTGGACAAGAAATGCGAAAAGTGGGGTTATATTGGATGAGCACACTCTTGGATTACCAGGCAGTTCTCAAGAGTCTTTAACTGCTCGCTATGAAAATCTTCGTCGGGAAGCTATCAAATATGTAGAAGAAGGGGCAGCATCAACACATATTTATAATGTGGCGATGGATGCTCTACATGAAGCAGCAAAGAAAGTTTATGCTGCAAAGAAACAGGGTGCTGGGGTCACACCAAGTACTTCGGTTAAAGAATGCCAGCTTCAATCTAGTTCTGTGGAGCAGGACAAGAGAATTGAAGAACTGACAGCAGAGTTGGAAAATGCAAGTCAGAGGTGTGAGGCATATCGAGCCAGTCTGCTTGCTGTTTTGAAAGATATGGAAGAAGAGAAATTAAAGATAGCAGTGAAAGTTCAGAACACAAGGCTGAATCTCAAAGGTTGA 2280 0.4461 MDFEPLNIENEVMEFAMGSGEEDNGLDLEHNDEYEGYNGEMMENSSAAGRDSLALNGDPNLEPSEGMEFDSEQAARIFYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRREGGENRSKRQRTVTRVGCKAQMTVKKQNSGKWAVTKLVKEHNHDLVPPDKVHCLRSHRHVSGPARSLIDTLQAAGMGPSGVMSVLIKESGGINNVGFTKVDCQNYMSSSRQRTLGSGGQHIFDYLKRMQGEDPGFFCAVQGDSENPTGNIFWADANSRVNYQYFGDTVTFDTAYRTNRYRVPFAPFTGWNHHGQPVLFGCALLLNESESSFVWLFQTWLAAMSDHHPLSITTDQDRIIRAAVAQVFPGTRHRFCKWNVFREAQEKLFHVNQSHLTFEAEFQRCINLTETIDEFESSWESLLEKYNLLDNEWLQSMYNARQQWVPVYLRDTFFGEMSITQGTDSINSFFDGYINASTSIQVLLKQYEKATASRYEKEVKADYDTINTAPVLKTPSPMEKQAANLYTRKIFTQFQEELVETLANPATVIDDGGSEALYRVAKFGEDHKAHFIKFNVFERKASCSCQMFEFSGIICRHILAVFRVTNVLTLPSHYILKRWTRNAKSGVILDEHTLGLPGSSQESLTARYENLRREAIKYVEEGAASTHIYNVAMDALHEAAKKVYAAKKQGAGVTPSTSVKECQLQSSSVEQDKRIEELTAELENASQRCEAYRASLLAVLKDMEEEKLKIAVKVQNTRLNLKG* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0038 759 Pfam MULE transposase domain 286 377 IPR018289 -
Vvi18g0038 759 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 679 IPR031052 GO:0006355
Vvi18g0038 759 Pfam SWIM zinc finger 555 600 IPR007527 GO:0008270
Vvi18g0038 759 Coils Coil 637 657 - -
Vvi18g0038 759 Coils Coil 704 731 - -
Vvi18g0038 759 ProSiteProfiles Zinc finger SWIM-type profile. 570 602 IPR007527 GO:0008270
Vvi18g0038 759 SMART 26again6 577 604 IPR006564 GO:0008270
Vvi18g0038 759 Pfam FAR1 DNA-binding domain 78 165 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0038 Vvi-Chr18 436883 441670 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi18g0038 MULE 5.5e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0038 - - vvi:100259892 1526.15