Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0029 ATGGCTCTGCGGCAGCCTTGTTCAGTTTCATCATCTTCATCGTCTTTCTTCGGAGGTTATCGCCACAGACTCTGCTCGAAGATATCATGGCCAAAATCTCGAAATGTCAACTCCACCAGTACTTATTCAGGTTGCAAAGCTTCATGGCAAGAGCTCGCCGGCGTTTTAATATTCTCAGCGATTCCTTTCACCGCCGTTAAAGCCATAGCGAATAGCCCTCTCGGAGAGTCGCTTCAGAGCCGAATGGAGGAGAATAAGAAGGCCGCCGTAAAGAATTCTTCAAAGTTCAAGGCCTTAGCTGAAAAGGCTAAAAACGAGAGTCTGTGGTATGGAGAAGAACGTCCTCGCTGGCTTGGTCCAATCCCATATGACTATCCTGCATATCTCACTGGAGAACTTCCTGGGGATTATGGCTTTGATATTGCTGGTCTGGGCAAGGATCCTGTGGCTTTCCAAAAATATTTCAATTTTGAGATACTGCATGCGCGCTGGGCTATGCTTGCAGCCCTTGGTGCTCTACTTCCAGAATTATTAGACCTATTGGGAGCCTTTCACTTTGTTGAACCTGTCTGGTGGCGAGTCGGCTATTCAAAGCTCAAGGGAGATACATTAGACTATCTTGGCATCCCAGGATTTCACTTTGCTGGAAGCCAAGGAGTAATTGTCATTGCTATTTGCCAAGCCCTGCTGATGGTTGGACCAGAATATGCAAGATATTGTGGGATTGAAGCTTTGGAGCCTCTGGGAATTTACCTGCCTGGTGATATTAATTATCCAGGAGGAGCTCTTTTTGATCCCCTGAATCTCTCTAAAGATCCTGTAGCCTTTGAAGAGCTGAAGGTGAAAGAAATTAAAAACGGGCGCTTAGCAATGGTTGCCTGGCTGGGGTTTTATATACAAGCTGCTGCTACAGGTAAAGGTCCTGTACAAAACCTTCTTGACCACTTAGCAGATCCCTTCCACAATAACCTGCTTTCCATTTTCAAAGCCTTGTAA 996 0.4598 MALRQPCSVSSSSSSFFGGYRHRLCSKISWPKSRNVNSTSTYSGCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQSRMEENKKAAVKNSSKFKALAEKAKNESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAATGKGPVQNLLDHLADPFHNNLLSIFKAL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0029 331 SUPERFAMILY Chlorophyll a-b binding protein 108 328 - -
Vvi18g0029 331 Pfam Chlorophyll A-B binding protein 126 301 IPR022796 -
Vvi18g0029 331 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 80 328 IPR001344 GO:0009765|GO:0016020
Vvi18g0029 331 FunFam Chlorophyll a-b binding protein, chloroplastic 116 328 - -
Vvi18g0029 331 Gene3D Chlorophyll a/b binding protein domain 116 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0029 Vvi-Chr18 381855 387228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0029 28 330 Chloroplast and Mitochondria Gene Families AT1G76570 78.548 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0029 K14172 - vvi:100256544 592.808