Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0027 ATGGAAGAGGTTGGTGCGCAAGTGGCTCCTCCAATTTTCATCCACCAGACGCTTTCAAGTCGATTCCATGAAGCTGTTCCCATGGCAAAGAAACGGGATCTGCCGTATCCAAGCTCTAATTTTCAACATCAGCATCCGCAGCGGTTTCAAAACCCTAGAGACAATTGGAACCCCAAGGTCTGGGATTGGGACAGTGTGAGGTTCGTTGCTAATCCGTTGGAATCGGAGCTGCTGCGCCTGGGTACTGCAACTCCGGTGCAAACGGAGCTGAAAAAGAAGCAGGAAGGTACTGGAATCACCACCGCGTTGAAGAAAAACCCTGTGGATGAAGACGATGAGAGCCTTAGGCTGAAGCTGGGTGGGGGCTTGAGCTCAATTGAGGAGCCAGTGTCCAGGCCGAGCAAAAGGGTTCGCTCTGGATCTCCCGGCAGTAGCAGCTATCCGATGTGTCAGGTTGATAACTGTAGAGAAGATCTCTCAAATGCGAAAGACTATCACCGGCGGCATAAGGTGTGTGAGATGCATAGCAAATCCACCAAAGCCTTAGTGGGGAAGCAGATGCAAAGGTTCTGCCAGCAGTGCAGCAGGTTTCACCCACTTTCAGAGTTTGATGAGGGAAAGAGAAGCTGCAGGAGGAGACTTGCTGGGCACAACCGGCGCAGAAGGAAAACCCAGCCAGAGGATGTTAGCTCACGCCTGCTACTCCCTGGAAACCGGGACAACACTGGCAATAGAAATTTGGATATCGTTAACTTATTGACAGCTTTAGCTCGTACACAAGGGAACAATGAGGTCAAAAGTGCGAATAACTCATCTGTACCAGATAGAGACCAACTCATTCAAATTCTTAGCAAGTTAAACTCGCTACCTTTGCCAGCAGATTTTGCGGCAAAGCTGCCAATTTCTGGAAGTTTAAATAGGAATACACCAGGACAGTCATCTTCAGAACATCAAAACAGATTGAATGGAAAGACATCTTCTCCATCAACCATGGACTTGCTTGCTGTTCTTTCAGCCACTCTAGCAGCTTCTGCTCCTGATGCCCTTGCATTTCTATCTCAAAGGAGCAGTCAAAGCAGTGACAGTGAGAAAACTAAGTTAACCTGCCTAGACCAGGCTACTGGTCCTGATTTGCAAAAGAGACAGACCCTAGAGTTTCCTTCAGTTGGAGGAGAGAGAAGTAGCACTAGCTACCAGTCTCCTATGGAAGATTCAGATTGCCAGGTTCAGGAGACCCAGCCAAATTTACCACTACAGCTCTTTAGTTCTTCACTCGAGGATGACAGCCCACCGAAATTGGGATCTGCTAGGAAGTACTTTTCATCTGACAGCAGTAATCCCATGGAAGAGAGGTCTCCTTCATCTTCTCCGCCTGTGGTGCAAAAGCTGTTTCCAATGCAGGCATCAATGGAAACTGTGAAACCTGAGAGGATGTCAATCAGTGGAGAGGTCAATGGAAATATTGGAGCTGGCAGGGCTCATGGTGCCACATCTCTTGAGCTCTTTAGGAGGTCAGATAGAGGAGCTGACAATGGTGCTGTCCAAAGTTTTCCTTACCAAGCAGGGTACACTTCTTCATCTGGGTCTGATCATTCACCTTCTAGTTTGAATTCTGATGCTCAGGATCGTACTGGGCGGATAATTTTCAAACTATTTGACAAGGATCCCAGTCATTTCCCAGGGACATTGCGAACAGAGATCTACAATTGGCTTGCTCACAGTCCATCAGAAATGGAGAGCTACATAAGGCCAGGATGTGTGGTTCTATCAGTTTATGCATCAATGTCATCAGCTGCCTGGGAGCAACTTGAAGAAAACCTTCTTCACCGGGTCAATTCCTTGGTTCAAGATTCAGATTCCGACTTTTGGAGAAATGGAAGATTCTTAGTTCATACAGGCAGGGAATTAGCATCACATAAAGATGGAAAGATTCGTTTATGCAAATCCTGGAGAACATGGAATTCCCCAGAGTTGATCTCAGTGTCCCCATTGGCGGTTGTGGGTGGACAGGAGACCTCTTTTTTATTGAAGGGAAGAAATCTTGCTAATCCTGGAACCAAGATTCATTGCACATATATGGGTGGATACACATCAAAGGAAGTTCCAGGATTAGCCCGCCAGGGAACTGTATACGATGAGATAAGCTTTGGCAGCTTTAAAATTAATGATGCAATTCCTAGTGTTTTAGGGCGGTGTTTCATTGAGGTGGAAAATGGTTTCAGAGGCAACAGCTTTCCTGTAATAGTAGCTGATGCCACTATTTGTAAGGAGTTGAGACTCCTTGAATCAGAATTTGATGAAGAGGCAAAAGTGTGTGATGTCATTTCAGAAGACCAGGTTTATGATTCTGGGCGGCCCAGTTCTAGGGAAGAAGTTCTGCACTTCTTAAATGAACTTGGATGGCTATTCCAAAGGAAGTTTTCTATGCTTGCAGGTCCGGATTATTCCCTTGCTCGGTTCAAATTTCTGTTCACATTTTCAGTTGAGAGGGACTGCTGTGCCTTGGTCAAAACACTTCTAGACATACTGGTGGAAAGAAACTTGGGCAGTGATGGGCTATCAAGCAAGTCTTTGGAGACACTGTCAGAGGTTCAGCTCTTGAGCAGGGCAGTCAAAAGGAGGTACAGGAAAATGGTTGACTTGCTTATCCATTATTCTGTGGCTAGCAGTTCATCCAAGAAATACATTTTCCCACCTAATCTCGTGGGAGCTGGTGGTATTACCCCTCTACATTTGGCTGCTTGTACTGCGGGGTCGGATGATATCATTGATGCTCTGACAAGTGACCCACAAGAGATTGGATTGCACTCCTGGAATTCCCTTTTGGATGCTAGTGGGCAATCTCCATATGCATACGCTATGATGAGGAACAACCACTCTTATAACAGGTTGGTAGCGCGTAAACTTGCTGACAGAAGGAATGGTCAAGTCTCTTTATCAATTGAAAATGCGATGGAGCAACCATGGCCGAAAGTAGGGCAGGAGCAACATTTTGGACAAGGACGCAGTTCTTGTGCCAAGTGTGCAGTTGTGGCAGCAAAATACAGCAGGAGGATGCCAGGTTCACAAGGCTTGCTTCACCGTCCCTACATTCATTCAATGCTCGCCATTGCTGCTGTCTGTGTTTGTGTTTGCCTGTTCTTGCGTGGCTCCCCAGACATTGGCTTGGTTGCTCCTTTCAAGTGGGAGAATTTGGATTATGGTACAAGTTAG 3213 0.465 MEEVGAQVAPPIFIHQTLSSRFHEAVPMAKKRDLPYPSSNFQHQHPQRFQNPRDNWNPKVWDWDSVRFVANPLESELLRLGTATPVQTELKKKQEGTGITTALKKNPVDEDDESLRLKLGGGLSSIEEPVSRPSKRVRSGSPGSSSYPMCQVDNCREDLSNAKDYHRRHKVCEMHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVSSRLLLPGNRDNTGNRNLDIVNLLTALARTQGNNEVKSANNSSVPDRDQLIQILSKLNSLPLPADFAAKLPISGSLNRNTPGQSSSEHQNRLNGKTSSPSTMDLLAVLSATLAASAPDALAFLSQRSSQSSDSEKTKLTCLDQATGPDLQKRQTLEFPSVGGERSSTSYQSPMEDSDCQVQETQPNLPLQLFSSSLEDDSPPKLGSARKYFSSDSSNPMEERSPSSSPPVVQKLFPMQASMETVKPERMSISGEVNGNIGAGRAHGATSLELFRRSDRGADNGAVQSFPYQAGYTSSSGSDHSPSSLNSDAQDRTGRIIFKLFDKDPSHFPGTLRTEIYNWLAHSPSEMESYIRPGCVVLSVYASMSSAAWEQLEENLLHRVNSLVQDSDSDFWRNGRFLVHTGRELASHKDGKIRLCKSWRTWNSPELISVSPLAVVGGQETSFLLKGRNLANPGTKIHCTYMGGYTSKEVPGLARQGTVYDEISFGSFKINDAIPSVLGRCFIEVENGFRGNSFPVIVADATICKELRLLESEFDEEAKVCDVISEDQVYDSGRPSSREEVLHFLNELGWLFQRKFSMLAGPDYSLARFKFLFTFSVERDCCALVKTLLDILVERNLGSDGLSSKSLETLSEVQLLSRAVKRRYRKMVDLLIHYSVASSSSKKYIFPPNLVGAGGITPLHLAACTAGSDDIIDALTSDPQEIGLHSWNSLLDASGQSPYAYAMMRNNHSYNRLVARKLADRRNGQVSLSIENAMEQPWPKVGQEQHFGQGRSSCAKCAVVAAKYSRRMPGSQGLLHRPYIHSMLAIAAVCVCVCLFLRGSPDIGLVAPFKWENLDYGTS* 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0027 1070 MobiDBLite consensus disorder prediction 517 539 - -
Vvi18g0027 1070 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 91 948 IPR044817 GO:0003677
Vvi18g0027 1070 Pfam SBP domain 150 223 IPR004333 GO:0003677
Vvi18g0027 1070 ProSiteProfiles Zinc finger SBP-type profile. 147 224 IPR004333 GO:0003677
Vvi18g0027 1070 MobiDBLite consensus disorder prediction 119 148 - -
Vvi18g0027 1070 MobiDBLite consensus disorder prediction 216 241 - -
Vvi18g0027 1070 MobiDBLite consensus disorder prediction 302 327 - -
Vvi18g0027 1070 MobiDBLite consensus disorder prediction 388 429 - -
Vvi18g0027 1070 FunFam Squamosa promoter-binding-like protein 14 141 211 - -
Vvi18g0027 1070 Gene3D - 823 996 IPR036770 -
Vvi18g0027 1070 MobiDBLite consensus disorder prediction 438 460 - -
Vvi18g0027 1070 SUPERFAMILY Ankyrin repeat 869 965 IPR036770 -
Vvi18g0027 1070 Gene3D - 140 211 IPR036893 GO:0003677|GO:0005634
Vvi18g0027 1070 MobiDBLite consensus disorder prediction 513 539 - -
Vvi18g0027 1070 MobiDBLite consensus disorder prediction 370 460 - -
Vvi18g0027 1070 SUPERFAMILY SBT domain 148 228 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0027 Vvi-Chr18 348407 353213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0027 1 1069 SBP-box Gene Family AT1G20980 57.866 0.0 1136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vvi18g0027 SBP 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0027 - - vvi:100240978 2091.62