Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0026 ATGGGACAGAGACCTTGGCTTTACAAGTCTTCGTTGGAGATGAAAACATATGTATCACATACTACATTTTCTCCCGAGGAGAAATGTGACTGGGACAAAGACTTTCTGCTGAATTGCACTGCCACTGGATTACTCCTTGGTGCCAACATTCCTGTTGTGAGTGTATCAGTGAAGGAGGCCACACTGGTTGTCACAATTCATCCGGCTTATGACTGCTACAACGAGCTCGGGTTGGCTGATTACTTCGACCAGGCGATCGAACTGGTTGAAAACAGCTCATTCACATTCTCTGACTCCCGCAACAAATTCACAGCTTTGGGTTGCGACACCATGGCCTATGTGATGGGTCCTAAGGCGCAGCTACATGACTGCGGCCAGAAATCTATATGCAAAGACTCTAACACAACTCGCTCTGGATATCTTTGCTCCTGCGAACAAGGCTATGCAGGGAACCCTTATCTGCCCAACGGATGCCAGGCAGATATCAATGAATGCGAAGATCCAAAAACTTACACATGCCAAGGTACTTGCAAGAATACAGCTGGGAACTACACTTGCAGCTGTCCACTGGGAATGCATGGGAATGGTAAAGTGGCTTGTCAAGGATTTCGTGTCACCACATTTGCCGCAGTTATTGGAGCGGTTGTTGTTGCTGTGGTTGCTTGTATTTTAATCTTCATTGAATGGAAGAAGCTGGCGAGACATAAAAATTTTAAGAAAAATGGGGGTTTGCTCTTAAAGCGCCAGAGGATAAAGCTCTTTACTGAGGCAGAATTGAAGAAAGCAACCAACAATTACGACCGCAGTCGGCTGCTTGGTCGAGGAGGTTCTGGACATGTTTACAAAGGTATTTTAGCGGATGACGTCCAAGTTGCTGTGAAAAAGCCGGTAGAAGCGGACAAGATTCAAATAAACGAGCAGTTCCAACATGAAATTGACGTTGTTTCACAGGTCAACCATGTCAATGTGGTGAAGCTCTTGGGGCTATGTCTAGAGACTCCAGTCACAATGCTGGTTTATGAATTTGTGTCTAATGGAACACTGTTTCAACATATCCATGACCCGAATTCAGAAATCGTTCGCTCATGGAAACTCCGGCTGAGGATTGCTATCGAGACTGCGGGAGCACTCAAGTATCTTCATTCTTTAGCTGATCCCCCTGTCATTCATAGGGATGTCAAATCCACGAACATACTTCTAGACAACAAACATGCTGCTAAGGTAGCAGATTTTGGAACTTCAGTGCTGATTCCGCTGGATCAAACTGCCATAAACACAAAAATAGCAGGGACATTGGGGTACTTGGATCCTGAGTATATGCAAACCGGAAACTTAACTGCCAAGAGTGATGTCTATAGCTTTGGCGTTGTCGTCATGGAGCTTTTAACGGGATGGAATCCAACTCCTGGTGGAAGGTCTGTGGATGATCCAAATAGGAATATCATTCATGACTTTCTCTGCGCCGTGGAAACTAATCGTCTCTCTGACATTTTGAACATTAGCATTAATGGTGAAGCTGAAAGGAAGCAGATAGAAGGAGTTGCTGAGCTTGCAAAGAGATGTCTAAGTGGGAGTGGAGTGGCAAGGCCAACAATGCAACAAGTGGAAGACGAGCTCAAGGGCATGCAACGAGAAGCTGAGAATTTGTTGGCCGGTGAAAGTGAAACCGGGGAAGAGACCCAGAGCTTACTAAGTGAAATAGAGGGCCGATCCTCCGAAAAGGATGAGTCCCATTCCCATACCCATTACGTGACAGCCTTTGATATTCAACCACAAGAGATAATCCAACTGACAGAAAAGAGTAATGTGTGTAGTTTTGGAGGAGTTCCAGCAGATCTCCTAACTGGAAAGATGCCAAATGCAGCAAAATGGCCTCTTTCAAATTCTCAAAGCCCATGTAGTGAATGA 1908 0.4534 MGQRPWLYKSSLEMKTYVSHTTFSPEEKCDWDKDFLLNCTATGLLLGANIPVVSVSVKEATLVVTIHPAYDCYNELGLADYFDQAIELVENSSFTFSDSRNKFTALGCDTMAYVMGPKAQLHDCGQKSICKDSNTTRSGYLCSCEQGYAGNPYLPNGCQADINECEDPKTYTCQGTCKNTAGNYTCSCPLGMHGNGKVACQGFRVTTFAAVIGAVVVAVVACILIFIEWKKLARHKNFKKNGGLLLKRQRIKLFTEAELKKATNNYDRSRLLGRGGSGHVYKGILADDVQVAVKKPVEADKIQINEQFQHEIDVVSQVNHVNVVKLLGLCLETPVTMLVYEFVSNGTLFQHIHDPNSEIVRSWKLRLRIAIETAGALKYLHSLADPPVIHRDVKSTNILLDNKHAAKVADFGTSVLIPLDQTAINTKIAGTLGYLDPEYMQTGNLTAKSDVYSFGVVVMELLTGWNPTPGGRSVDDPNRNIIHDFLCAVETNRLSDILNISINGEAERKQIEGVAELAKRCLSGSGVARPTMQQVEDELKGMQREAENLLAGESETGEETQSLLSEIEGRSSEKDESHSHTHYVTAFDIQPQEIIQLTEKSNVCSFGGVPADLLTGKMPNAAKWPLSNSQSPCSE* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0026 635 Coils Coil 532 552 - -
Vvi18g0026 635 SMART egf_5 107 159 IPR000742 -
Vvi18g0026 635 SMART egf_5 164 201 IPR000742 -
Vvi18g0026 635 Pfam Protein kinase domain 266 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0026 635 Gene3D Transferase(Phosphotransferase) domain 1 343 561 - -
Vvi18g0026 635 SUPERFAMILY Protein kinase-like (PK-like) 245 539 IPR011009 -
Vvi18g0026 635 ProSiteProfiles EGF-like domain profile. 161 201 IPR000742 -
Vvi18g0026 635 FunFam Wall-associated receptor kinase 3 239 342 - -
Vvi18g0026 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Vvi18g0026 635 MobiDBLite consensus disorder prediction 549 580 - -
Vvi18g0026 635 ProSiteProfiles Protein kinase domain profile. 266 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0026 635 SMART egfca_6 161 201 IPR001881 GO:0005509
Vvi18g0026 635 CDD EGF_CA 161 194 - -
Vvi18g0026 635 SMART serkin_6 266 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0026 635 ProSitePatterns Calcium-binding EGF-like domain signature. 161 186 IPR018097 GO:0005509
Vvi18g0026 635 ProSitePatterns Protein kinases ATP-binding region signature. 272 295 IPR017441 GO:0005524
Vvi18g0026 635 Gene3D Phosphorylase Kinase; domain 1 238 342 - -
Vvi18g0026 635 SUPERFAMILY Growth factor receptor domain 120 202 IPR009030 -
Vvi18g0026 635 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 177 188 IPR000152 -
Vvi18g0026 635 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 90 545 IPR045274 GO:0007166
Vvi18g0026 635 Gene3D Laminin 117 200 - -
Vvi18g0026 635 FunFam Wall-associated receptor kinase 2 343 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0026 Vvi-Chr18 338896 344306 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0026 88 543 Receptor kinase-like Gene Family AT1G21230 43.173 1.30e-112 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vvi18g0026 Pkinase 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0026 - - vvi:100263237 1100.5