Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0017 ATGGGGAGGAAGAGGCCAATAGATGGAGCAGTCAGCCGTCAAGGTCAAGCCTATCTCCTCAACTCCAACCCCTCTGATATCGCCACCATTAACCAAATCTCGGATGTTAACAAGATCCCCAAGGACACTGTCCTCATTGTCCCGGTCAATTGTTCTTGTTCAGGCCATTTCTACCAGTACAACGCCTCCTACACCTTGAAGTATGATTTCGAGAATTACTTCACCCTCGCCAACAACACCTACCAAGGCCTCACCACTTGCCAGGCACTCAAGGCTCACAACCCATATTACTATCGAAACCTTTCCGTGGGTATGGACCTGCTGGTTCCTCTCATGTGCGCCTGCCCCACCGCCAACCAGACCGCCGCCGGCTTCAACTACTTGCTCACTTATCTCGTTACTTGGGGCGATTACATCTCTTCAATTGCAGATACCTTCGGTGTCGATGACATACAGTCCATATTTGATGCCAATAGCCTCTCTTCCGACCTTATTTTCCCCTTCACCCCAATTCTTGTCCCGCTAAAGAATCCTCCCACCAGGATCCAAACTACCCTCTCTCCACCGCCTCCAAAATCGCCCGTAGTCCCCAACGGTGGAGGGGCTGATTCTTCCAAGAAATGGGTTTACGTTGGGGTTGGGATTGGAGCCACTTTACTCGTTCTTTTAATGCCCTCCGGAATTATATTATGTCTACTTCGCCGCCGTCTCCAATCTCGACAAGACAAGCCGGTCCCGGGAGCTGGAGGAGGCACGAAGAAGCCTTCGTACTCCATGGAAAACAACATATCATTATCTGTTTCTTCAGGAGGCATTCATCACGCAGTAGAGTCCTTGACGGTGTACAAGTATGAGGAGTTGCAAAAGGCAGCTGGATTTTTCGGAGAAGCTAACAGAATTAAGGGTTGTGTATACAGGGGTTTGATTAAGGGTGATGATGCGGCCATAAAGATGATGAAAGGAGACGTGTCTGAGGAGATCAATATACTGAAACTGATCAATCATAGCAACGTGATCAGGCTTTCAGGTTTCTGCGTACACAAGGGGAACACCTACCTAGTTTATGAGTATGCGGAGAATGGGTCTCTCAGCGACTGGCTTCATGGTGATGGTCGAATTGGTTCTACTCTGGGATGGAAGCAGAGGGTTCAAATAGCCTGTGATGTGGCGAATGCCCTGAATTACCTCCACAACTTCACCAATCCCCCATGTATACACAAGAACTTGAAGAGCAGCAACATCCTCTTGGATGGTAATATGAGAGGCAAGGTCGCCAATTTTGGGCTGGCAAGAAGACTGGAGAATGAAGAGGGGGGAGGTGGACGGCTGCAACTGACGAGACATGTGGTGGGGACTCAGGGCTACATGGCCCCTGAGTACATGGAGAATGGCTTGATTACCCCAGAACTGGATGCTTTTGCTTTTGGTGTGGTGATATTGGAGCTGTTAACAGGCAAGGAAGCCGCACCTTCTCAAAACAAGGAGGGGAGGGGGTTGTGTGTGTCAGTAAACGAGGTGCTTGAGGGGGATGATGTGAGACACAAACTGAGAGGCTTCATTGATCCTTGCCTCACCCATGACTACCCCTTTGATTTGGCTTTCACAATGGCCCAGCTGGCTAAATCTTGCATTGCCCATGATCTTAATGCTCGCCCAACCATGTTTGACATTTTGATTATCCTCTCCAAGATTCTCTCCTCCTCCTTGGACTGGGATTCATTTGATGATTTTCAATCCACTGGCTTTCTAAGCCATGGGTGA 1761 0.4912 MGRKRPIDGAVSRQGQAYLLNSNPSDIATINQISDVNKIPKDTVLIVPVNCSCSGHFYQYNASYTLKYDFENYFTLANNTYQGLTTCQALKAHNPYYYRNLSVGMDLLVPLMCACPTANQTAAGFNYLLTYLVTWGDYISSIADTFGVDDIQSIFDANSLSSDLIFPFTPILVPLKNPPTRIQTTLSPPPPKSPVVPNGGGADSSKKWVYVGVGIGATLLVLLMPSGIILCLLRRRLQSRQDKPVPGAGGGTKKPSYSMENNISLSVSSGGIHHAVESLTVYKYEELQKAAGFFGEANRIKGCVYRGLIKGDDAAIKMMKGDVSEEINILKLINHSNVIRLSGFCVHKGNTYLVYEYAENGSLSDWLHGDGRIGSTLGWKQRVQIACDVANALNYLHNFTNPPCIHKNLKSSNILLDGNMRGKVANFGLARRLENEEGGGGRLQLTRHVVGTQGYMAPEYMENGLITPELDAFAFGVVILELLTGKEAAPSQNKEGRGLCVSVNEVLEGDDVRHKLRGFIDPCLTHDYPFDLAFTMAQLAKSCIAHDLNARPTMFDILIILSKILSSSLDWDSFDDFQSTGFLSHG* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0017 586 Gene3D Transferase(Phosphotransferase) domain 1 358 576 - -
Vvi18g0017 586 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 17 573 - -
Vvi18g0017 586 Gene3D Phosphorylase Kinase; domain 1 268 357 - -
Vvi18g0017 586 ProSiteProfiles Protein kinase domain profile. 283 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0017 586 SUPERFAMILY Protein kinase-like (PK-like) 302 558 IPR011009 -
Vvi18g0017 586 Pfam LysM domain 131 174 IPR018392 -
Vvi18g0017 586 FunFam PTI1-like tyrosine-protein kinase 3 358 575 - -
Vvi18g0017 586 ProSiteProfiles LysM domain profile. 129 173 IPR018392 -
Vvi18g0017 586 Gene3D LysM domain 129 184 IPR036779 -
Vvi18g0017 586 MobiDBLite consensus disorder prediction 183 202 - -
Vvi18g0017 586 Pfam Protein kinase domain 316 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0017 Vvi-Chr18 260924 263133 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0017 17 583 Receptor kinase-like Gene Family AT2G33580 50.671 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vvi18g0017 Pkinase 1.4e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0017 - - vvi:100258108 857.825