Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0016 ATGGTGAGAGGAGTGGGTGAAGATTGGTCATGGCTGGTTAAAAAAGTTTTCTTCCCCATCTCTCTGCCACAGAGTATGCAACTGCATATGGAAATGGAGAAGAATATGAACAGTCGTGTTTACATTAAATTTGGGGGGTGGTGGTGGAGGATGAGGATGGTACTCCTCCTCTTGGTCTGGATATCAGTAGCTCAGGCCCAACAATCCTATGTCAACAACCACCAGCTTGACTGTGACAACAACTTCAATGAGACGAATGGATTCCAGTGCAACGGGCCTAGATCATGCCATTCCTACCTGACCTTCCGATCTGCCCCTCCTTCGTACGACAGCCCACCCTCCATAGCCTACCTCTTGAATTCCGAACCAGCTCAGATCGCCACCATTAACGAAGTTTCCGATGTTGACACAATCTCCAAGGACACCGTCCTGATTGTCCCAGTCAACTGTTCCTGTTCAGGTGATTTCTATCAACACAACACCACCTACACCTTGAAATCTGCTTCCGAGACTTACTTCTCCCTCGCCAACAACACCTACCAAGGCCTCACCACTTGCCAGGCCCTCAAGGCTCAGAACCCTTATGACTATCGGAACCTCTCGGTGGGGTTGCATCTGCAGGTTCCGCTCATGTGCGCCTGCCCCACTGCGAATCAGACCGCCGCCGGATTTAACTACTTGCTTTCTTATCTCGTCACCTGGGGCGATACTATCGATTCAATCGCTAAAATCTTTGGTGTGGATGACGTGCAGTCCATATATGATGCCAATCGCCTCTCTTCTACTAGCGTTATTTACCCCTTCACCCCCATTCTCGTCCCGCTTAAGAATCCTCCCTCCAAGATCCAAACTACCGTCTCTTCGCCTCCGGCACCGTCTCCAGAAACCCCCATGGTCCCCTCTGGCGGAGGCAGTAATTCTTCCAAGAAATGGGTTTTCATTGGGGCTGGTATTGGAGCCGCTTTACTCGTTCTTTTAATCTCCTCTGGAATGATGTTTTGCTTCTTTCGCCGTCGCCGCCAATCTGGACAAGACAAGCCAGTTTTGGACTTGGGAGAAGCTACCAAGCTTTCAAAATCCCTGGAAAACAAAACATCTATGTCTATTTCTCTAGAAGGGATTCGTATTGAAATGGAGTCCCTCACCGTGTACAAGTATGAAGAGTTGCAGAAGGCTGCTGGGTATTTTGGTGAAGCTAACAGAATCAAGGGTTCTGTCTATAGGGCCTCGTTTAAGGGCGATGATGCGGCCATAAAGATGATGAAAGGAGATGTGTCTGAAGAGATCAACATTCTAAAGCAGATCAACCACAGCAAGGTGATCAGGCTTTCAGGTTTCTGCATACATGCAGGGAACACCTACCTTGTTTATGAGTATGCAGAGAATGGGGCTCTGAGAGACTGGCTTCATGGTGATGGTGAAACTTGTTCTACTCTGGGGTGGAAACAGAGGGTTCAAATAGCCTATGATGCAGCGGATGCCCTGAATTACCTCCACAACTTCATCAGTCCCCCATGTATACACAAGAACTTGAAGATCAGCAACATCCTCTTGGATGGTAACATGAGAGGCAAGGTCACCAATTTTGGACTGGCAAGGCGATTGGGGAATGAAGAGGGAGATGGAGGGGGGCTGCAACTGACGAGACATGTGGTGGGGACTCAGGGTTACATGGCTCCCGAGTACGTAGAGAATGGTGTGGTTACCCCAAAACTAGATATTTTTGCTTTCGGTGTTGTGATATTAGAGCTGTTAACTGGCAAGGAAGCTGCGCCTTCTCAAAAGAAAGAAGGAGGGGAGTTGTTATCTGTGTCAATAAATGAGGTGCTTCAAGGGGATAATGTGAGAGACAAACTGAGAGGCTTCATTGATCCTTGCCTTGCCCATGAGTACCCCTTTGATTTGGCTTTCTCCATGGCCCAGCTCGCCAAGTCATGTGTTGCCCATGACCTTAATGCTCGCCCAACCATGTCTGACATTTTCGTTATCCTCTCCAAGATTCTCTCCTCCTCTTTGGACTGGGATCCATCTGATGATTTTCAAGCCTCTGGCTCTCTAAGCCATGGTAGATAG 2073 0.4848 MVRGVGEDWSWLVKKVFFPISLPQSMQLHMEMEKNMNSRVYIKFGGWWWRMRMVLLLLVWISVAQAQQSYVNNHQLDCDNNFNETNGFQCNGPRSCHSYLTFRSAPPSYDSPPSIAYLLNSEPAQIATINEVSDVDTISKDTVLIVPVNCSCSGDFYQHNTTYTLKSASETYFSLANNTYQGLTTCQALKAQNPYDYRNLSVGLHLQVPLMCACPTANQTAAGFNYLLSYLVTWGDTIDSIAKIFGVDDVQSIYDANRLSSTSVIYPFTPILVPLKNPPSKIQTTVSSPPAPSPETPMVPSGGGSNSSKKWVFIGAGIGAALLVLLISSGMMFCFFRRRRQSGQDKPVLDLGEATKLSKSLENKTSMSISLEGIRIEMESLTVYKYEELQKAAGYFGEANRIKGSVYRASFKGDDAAIKMMKGDVSEEINILKQINHSKVIRLSGFCIHAGNTYLVYEYAENGALRDWLHGDGETCSTLGWKQRVQIAYDAADALNYLHNFISPPCIHKNLKISNILLDGNMRGKVTNFGLARRLGNEEGDGGGLQLTRHVVGTQGYMAPEYVENGVVTPKLDIFAFGVVILELLTGKEAAPSQKKEGGELLSVSINEVLQGDNVRDKLRGFIDPCLAHEYPFDLAFSMAQLAKSCVAHDLNARPTMSDIFVILSKILSSSLDWDPSDDFQASGSLSHGR* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0016 690 MobiDBLite consensus disorder prediction 282 303 - -
Vvi18g0016 690 FunFam PTI1-like tyrosine-protein kinase 3 460 678 - -
Vvi18g0016 690 CDD LysM 229 267 IPR018392 -
Vvi18g0016 690 SMART LysM_2 229 274 IPR018392 -
Vvi18g0016 690 Gene3D Phosphorylase Kinase; domain 1 369 459 - -
Vvi18g0016 690 ProSiteProfiles Protein kinase domain profile. 385 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0016 690 Gene3D Transferase(Phosphotransferase) domain 1 460 679 - -
Vvi18g0016 690 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 55 677 - -
Vvi18g0016 690 ProSiteProfiles LysM domain profile. 228 273 IPR018392 -
Vvi18g0016 690 Pfam LysM domain 230 274 IPR018392 -
Vvi18g0016 690 Gene3D LysM domain 228 286 IPR036779 -
Vvi18g0016 690 SUPERFAMILY Protein kinase-like (PK-like) 378 661 IPR011009 -
Vvi18g0016 690 Pfam Protein kinase domain 418 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0016 Vvi-Chr18 257291 259363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0016 51 686 Receptor kinase-like Gene Family AT2G33580 52.402 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vvi18g0016 Pkinase 4.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0016 - - vvi:100258108 1366.29