Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0001 ATGTCTAACGCTGTGGCGAATGGTCTGGCGGGAGCTGGAGCTGGTATAATTGCTCAGATTATCACTTATCCCCTCCAAACGGTGAATACCCGTCAACAAACGGAGAGAGTCGCCAAGAAAGTGGCCCCATCCCGCCCCGCATCTAGCACGCTTCTTCAGATTCTACAGGTCATAAGAAGTGAAGGTTGGGGAGGACTATACAGCGGCCTTAAGCCTTCCTTGTTTGGAACTGCTGCTTCACAGGGTATTTATTACTATTTTTATCAGGTTTTCAAAAACAAGGCTGAGGCCATTGCAACTGCCAATAGAGCCAAAGGACGTGGGGATGGTACTGTTGGCATCTTTGCTTGGATTATTGTGGCAGCTTTTGCTGGGTCCTTGAATGTATTGCTGACAAACCCTATATGGGTACTTGTGACCCGTATGCAGACGCATACTCAAGCAGAAAGAAAAATCATGGAGGCAAAGAAGGAAGCTCTATTGAAGGAAGCTAGTGAAAGAAATTTGATAGGTTCTCCTAATTTTCAAGACGGACTTGCTAAACTTAATGCAATGAAACCTCTTCCTTATGGGACACTGCATGCGGCACATGAAGTTTATAAAGAAGCAGGAATTACCGGATTCTGGAAAGGCATCATCCCAACACTTATTATGGTGTGCAATCCATCCATCCAGTTTATGATTTATGAGACGTCATTAAAGCATCTAAGGGCAAAACGTGCTGAGAACAAGCAGGGATTAAAAACCGTAACTGCTTTGGAGGTTTTCTTATTAGGGGCCTTGGCAAAACTGGGAGCAACTGTTGCAACGTACCCTTTATTGGTTGTCAAGTCAAGGCTTCAAGCAAAGCAGGAGATTGGTGGGAACATCTCATTAAGATACTCAGGTACATTTGATGCAATAATTAAGATGATCCGTTATGAAGGATTACCAGGATTTTACAAGGGAATGAGCACAAAGATAGTACAGAGTGTTTTTGCAGCTTCTGTACTTTTCATGGTCAAGGAGGAACTAGTAAAGGCCTACTTGGTGCTAGCAGATAAGAGCCGGAAAGTTCTACAGAAATGA 1068 0.4373 MSNAVANGLAGAGAGIIAQIITYPLQTVNTRQQTERVAKKVAPSRPASSTLLQILQVIRSEGWGGLYSGLKPSLFGTAASQGIYYYFYQVFKNKAEAIATANRAKGRGDGTVGIFAWIIVAAFAGSLNVLLTNPIWVLVTRMQTHTQAERKIMEAKKEALLKEASERNLIGSPNFQDGLAKLNAMKPLPYGTLHAAHEVYKEAGITGFWKGIIPTLIMVCNPSIQFMIYETSLKHLRAKRAENKQGLKTVTALEVFLLGALAKLGATVATYPLLVVKSRLQAKQEIGGNISLRYSGTFDAIIKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMVKEELVKAYLVLADKSRKVLQK* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0001 355 Gene3D Mitochondrial carrier domain 179 350 IPR023395 -
Vvi18g0001 355 Gene3D Mitochondrial carrier domain 1 167 IPR023395 -
Vvi18g0001 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 94 IPR018108 -
Vvi18g0001 355 SUPERFAMILY Mitochondrial carrier 3 337 IPR023395 -
Vvi18g0001 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 235 IPR018108 -
Vvi18g0001 355 Pfam Mitochondrial carrier protein 112 237 IPR018108 -
Vvi18g0001 355 Pfam Mitochondrial carrier protein 249 341 IPR018108 -
Vvi18g0001 355 Pfam Mitochondrial carrier protein 4 93 IPR018108 -
Vvi18g0001 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 250 341 IPR018108 -
Vvi18g0001 355 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 344 IPR044712 GO:0006862|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0001 Vvi-Chr18 4590 27609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0001 24 342 Chloroplast and Mitochondria Gene Families AT1G25380 25.466 8.54e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0001 K13354 - vvi:100254704 667.922