Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1157 ATGGAGAAGTTAAAATTGGAGATCTGGGTTTGGCAATTGTCATGTAGTAACCTACTGCACGAAGCCTCAACAATTGGTACTCCAGAGTTCATGGCACCAGAGCTTTATGAAGAGGAATATAATGAACTTGTTGACATATATTCTTTTGGCATGTGCATATTAGAGTTGATTACATGTGAATACCCATATAATGAATACAAAAATCCTGCACAAATATATAAGAAGGTTTCTTCGGGTATAAAGCCTGCTCCCCTTGGTAAAGTGAGTGACCCCCAAGTTAAGTACTTCATAGAGAAGCGTTTGGTTCCAGCATCCTTGAGATTGCCTGTACAAGTGCTCTTAAAGGACGCATTCTTTGCCACAAAAAATTCGAAGGAGCCTGTTTACAATCACATGCAGTTATTCAATTCTACGCACAACTCATTTAACTTGCCAGAATCTCAATCCCATGGCATGGACCCGGACCCTAAGGTTGATGGGCTTTTAGTGAGCACTCATAATGAAAAGCATCAGTACTTGATCCTTGTTCTTTTCCTTGTGATCTTTCACCTTTAA 555 0.3982 MEKLKLEIWVWQLSCSNLLHEASTIGTPEFMAPELYEEEYNELVDIYSFGMCILELITCEYPYNEYKNPAQIYKKVSSGIKPAPLGKVSDPQVKYFIEKRLVPASLRLPVQVLLKDAFFATKNSKEPVYNHMQLFNSTHNSFNLPESQSHGMDPDPKVDGLLVSTHNEKHQYLILVLFLVIFHL* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1157 184 SUPERFAMILY Protein kinase-like (PK-like) 21 143 IPR011009 -
Vvi17g1157 184 Gene3D Transferase(Phosphotransferase) domain 1 6 126 - -
Vvi17g1157 184 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 21 123 - -
Vvi17g1157 184 ProSiteProfiles Protein kinase domain profile. 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi17g1157 184 Pfam Protein kinase domain 22 78 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1157 Vvi-Chr17 17077854 17089089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1157 7 119 MAP Kinase Kinase Kinase AT1G49160 62.069 7.06e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vvi17g1157 Pkinase 9.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1157 K08867 - vvi:100246117 261.922