Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1144 ATGACACTAGTTGGTCTTTTCTTGGTGGGTTTTCTTTCAATGGTGTCAAGTGTTCATGGTCAAGGATGGATCAATGCTCATGCCACCTTCTATGGCGGGGGTGATGCTTCGGGGACAATGGGCGGTGCTTGTGGGTATGGAAACTTGTACAGCGAGGGGTATGGGACGAACACAGCAGCTTTGAGCACAGCTCTGTTCAACAATGGGTTGAGCTGTGGCTCTTGCTATGAGATTAAGTGCGTAAATGACGGAAAATGGTGCCTGCCTGGCTCCATTGTGATCACAGCCACCAATTTCTGCCCACCAAACAATGCCCTTCCAAACAATGCAGGAGGGTGGTGCAACCCTCCTCTGCATCACTTTGATCTCTCTCAGCCTGTCTTCCAACACATTGCCCAATACAGAGCTGGGATTGTCCCTGTCTCTTACAGAAGGGTACCCTGCAGGAGGAGGGGAGGCATCAGGTTTACCATCAATGGCCACTCCTACTTCAACCTAGTCCTCATCACAAACGTTGGTGGAGCTGGTGATGTTCATGCTGTGGCCATCAAAGGGTCAAGGACTGGCTGGCAGTCTATGTCCAGGAACTGGGGCCAAAACTGGCAGAGCAACACCTATCTTAATGGACAGAGCCTCTCATTCAAGGTCACCACCAGTAATGGCCACACTATTGTCTCCTACAATTGTGTCCCTGCTCACTGGTCCTTTGGCCAGACCTTCAGTGGAGCACAGTTTCGCTAA 741 0.5088 MTLVGLFLVGFLSMVSSVHGQGWINAHATFYGGGDASGTMGGACGYGNLYSEGYGTNTAALSTALFNNGLSCGSCYEIKCVNDGKWCLPGSIVITATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQHIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSRTGWQSMSRNWGQNWQSNTYLNGQSLSFKVTTSNGHTIVSYNCVPAHWSFGQTFSGAQFR* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1144 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 242 IPR007117 -
Vvi17g1144 246 Pfam Expansin C-terminal domain 154 231 IPR007117 -
Vvi17g1144 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 153 IPR007112 -
Vvi17g1144 246 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Vvi17g1144 246 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Vvi17g1144 246 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Vvi17g1144 246 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Vvi17g1144 246 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Vvi17g1144 246 PRINTS Expansin/Lol pI family signature 22 37 IPR007118 GO:0005576
Vvi17g1144 246 Pfam Lytic transglycolase 58 143 IPR009009 -
Vvi17g1144 246 SMART dpbb_1 58 143 IPR007112 -
Vvi17g1144 246 PANTHER EXPANSIN-A15 14 245 IPR002963 GO:0009664
Vvi17g1144 246 SUPERFAMILY PHL pollen allergen 150 241 IPR036749 -
Vvi17g1144 246 Gene3D - 11 149 IPR036908 -
Vvi17g1144 246 CDD DPBB_EXPA_N 22 148 - -
Vvi17g1144 246 FunFam Expansin 13 149 - -
Vvi17g1144 246 FunFam Expansin 153 245 - -
Vvi17g1144 246 SUPERFAMILY Barwin-like endoglucanases 11 171 IPR036908 -
Vvi17g1144 246 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Vvi17g1144 246 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Vvi17g1144 246 PRINTS Expansin signature 152 164 IPR002963 GO:0009664
Vvi17g1144 246 PRINTS Expansin signature 228 244 IPR002963 GO:0009664
Vvi17g1144 246 PRINTS Expansin signature 92 102 IPR002963 GO:0009664
Vvi17g1144 246 PRINTS Expansin signature 53 67 IPR002963 GO:0009664
Vvi17g1144 246 PRINTS Expansin signature 80 91 IPR002963 GO:0009664
Vvi17g1144 246 PRINTS Expansin signature 111 128 IPR002963 GO:0009664
Vvi17g1144 246 PRINTS Expansin signature 128 141 IPR002963 GO:0009664
Vvi17g1144 246 Gene3D - 153 245 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1144 Vvi-Chr17 16772521 16773735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1144 1 246 Expansin Gene Family AT2G03090 81.855 7.88e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1144 - - vvi:100261426 510.375