Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1136 ATGCTAATGGAAAATTTGCCTGAAGATCTCCAACGAGAAATACGACGCCATCTCTTCAAATTTATCAAGAATATCCACATTTTTTCTAAGATGGGCGATTCCAAGATGGGTGATACGATCTTAGATGCCATTTGTGAGAGGCTAAGACAAAAAACATACATCATGGGAAGCAAAATTTTATGTCATGGAGGTCTAATTGAGAAGATGGTTTTTATTGTGCGCGGGCAGATGTCGAGCATTGGAGTTGCAACTCCTTTAGGTGAATGGGATGTTTGTGGTGAGGAACTTCTTGCTTGGTGTATTGAGAATTCTTCAGTGAATAAAGATGGTAAAAAAATCAGGTTTCCAGGACAGAGATTGCTGAGCAACAGGGATGTAGTGTGTTTAACAAATGTAGAAGCATTTATTCTCCGAGCTGCAGATATTGAAGAAGTCACGGGTATTTTCTCAAGATTTTTGCGGAATCCAAAGGTTCAAGGAGCCATAAGGTATCAATCCCCTTACTGGAGAACTTTTGCAGCAACCCGGATTCAAGTAGTATGGAGATACAGGAAGAAGTGTCTGAGCCGTGCAAACACGTCCAATACCCAGTTCAACAGCTTGTAG 606 0.4092 MLMENLPEDLQREIRRHLFKFIKNIHIFSKMGDSKMGDTILDAICERLRQKTYIMGSKILCHGGLIEKMVFIVRGQMSSIGVATPLGEWDVCGEELLAWCIENSSVNKDGKKIRFPGQRLLSNRDVVCLTNVEAFILRAADIEEVTGIFSRFLRNPKVQGAIRYQSPYWRTFAATRIQVVWRYRKKCLSRANTSNTQFNSL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1136 201 SUPERFAMILY cAMP-binding domain-like 16 154 IPR018490 -
Vvi17g1136 201 Gene3D Jelly Rolls 1 160 IPR014710 -
Vvi17g1136 201 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1136 Vvi-Chr17 16525112 16539980 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1136 1 108 Ion Channels AT3G17700 62.162 1.25e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1136 K05391 - vvi:100257953 409.068