Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1134 ATGGACAACAGGTCAGAAGTATTAGAAATGAGTGATCTTGAAAAAGATGAGACGCCAATGCTTTCAGAGGCTCATTCACAATATTTGGATGAACCTAGGGTTTCTCACTCGCATAGACGTACCTCTAGAAATCGGAGTGCATCCATTTCCATTCCTATGAACTCCATGGAGTCCTATCAAACTGAAAGCAGCCTTGTAAGTCATACTGGTCCCTTGAGGAATGAAAAGAAAACTCCGTTCATACCAATGAGTGGCCCACTGTTAAAATCTGAGGGCTTATTTCCACCTACTCCTGGTGTACGGGGCCACAGAAAGGCAGAGCCAAGGGCAGAAAATTTTCCTTCATTTAATGGAATGGAATGGAATAATCGGCCCCATAACAACTATGCTGGAAAAAATGAACATCTTCTGAGATCTGGACAGTTGGGAGTATGTAATGATCCTTACTGCACAATATGCCCAACACATTTCATTGACTCTAGACAGCAAAGGAACTCAAAGTTTCATTCTGCTTTCTATGGAGATGCTAGAGGATGGGCAAGGAGATTTTTTTCTTCTCTACAATCATATGTTCCTGGAATCATGAACCCTCATACTAAAGTTGTTCAACGATGGAACAGATTTTTTGTCATTTCTTGCTTGTTGGCAATTTTTGTGGACCCTTTATTTTTCCTCTTGCTGTCTGTGCAACAGGAAAATAAGTGCATAATTATTGACATGCCCCTAACAAAAACAATTGTGGTATTCAGAAGCATGACTGATTTCATTTACCTGTTAAACATGCTTCTACAGTTTAGGCTTGCCTATGTTGCTCCAGAGTCTAGAGTGGTTGGTGCTGGCGACCTAGTTGACCATCCAAAAAAAATTGCTATCCATTACCTTTGTGGATATTTTTTAATTGATTTATTTATTGTTTTACCGCTTCCTCAAATCATGATTTTGCTGGTCCTACCCATGTCCTTGGGAACATCTGGGGCAAATTATGCAAAGAATCTTTTGCGCACAGCAGTTCTTGTTCAGTACATTCCCAGGTTGTACAGGTTTCTACCTTTCCTTGCTGGTCAGTCTCCAAGTGGCTTCATATTTGAGTCAGCATGGGCGAATTTTGTTATAAATCTTCTCACTTTTGTGTTGTCTGGTCATGTTGTGGGGTCATGCTGGTACCTCTTTGGCTTACAGAGGGTAAATCAATGTCTTCGAGATGCCTGCCATAACTCCATAATAAAAAATTGTATGGATTTCATTGATTGTGGTCATGGGGAGAAAGTTAGAGATTTTAGAGATTTGCGAAATTTAGATTGGCAACCCTGGAAAAGCAATGAAAATGCTAGTGCTTGTTTCAGCGATGATGGTTTCCCGTATGGGATCTACACTAAAGCTGTCATTCTTACCACAAAACCTAGTATTGTGACGAGATATACATATTCATTGTTTTGGGGGTTCCAGCAAATCAGTACTTTGGCTGGGAATCAAACTCCGAGCTATTTTCTTTGGGAAGTCCTTTTTACTATGGGCATTATTGGTCTAGGCTTGTTGCTCTTTGCTCTTCTAATTGGAAATATGCAGAACTTCCTACAGGCTCTTGGACGAAGAAGGTTAGAAATGTCACTACGACGTCGTGATGTTGAGCAGTGGATGAGCCATCGACGGTTGCCTGAAGATCTTAGAAGGTAA 1674 0.4074 MDNRSEVLEMSDLEKDETPMLSEAHSQYLDEPRVSHSHRRTSRNRSASISIPMNSMESYQTESSLVSHTGPLRNEKKTPFIPMSGPLLKSEGLFPPTPGVRGHRKAEPRAENFPSFNGMEWNNRPHNNYAGKNEHLLRSGQLGVCNDPYCTICPTHFIDSRQQRNSKFHSAFYGDARGWARRFFSSLQSYVPGIMNPHTKVVQRWNRFFVISCLLAIFVDPLFFLLLSVQQENKCIIIDMPLTKTIVVFRSMTDFIYLLNMLLQFRLAYVAPESRVVGAGDLVDHPKKIAIHYLCGYFLIDLFIVLPLPQIMILLVLPMSLGTSGANYAKNLLRTAVLVQYIPRLYRFLPFLAGQSPSGFIFESAWANFVINLLTFVLSGHVVGSCWYLFGLQRVNQCLRDACHNSIIKNCMDFIDCGHGEKVRDFRDLRNLDWQPWKSNENASACFSDDGFPYGIYTKAVILTTKPSIVTRYTYSLFWGFQQISTLAGNQTPSYFLWEVLFTMGIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMSHRRLPEDLRR* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1134 557 MobiDBLite consensus disorder prediction 1 21 - -
Vvi17g1134 557 Gene3D - 198 528 - -
Vvi17g1134 557 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 145 557 - -
Vvi17g1134 557 SUPERFAMILY Voltage-gated potassium channels 197 530 - -
Vvi17g1134 557 MobiDBLite consensus disorder prediction 1 46 - -
Vvi17g1134 557 Pfam Ion transport protein 205 531 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1134 Vvi-Chr17 16376008 16453979 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1134 14 557 Ion Channels AT3G17700 61.331 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1134 K05391 - vvi:100246030 1121.3