Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1133 ATGCTAATGGAAAATTTGCCTGAAGATCTCCAAAGAGAAATACGACGCCATCTCTTCAAATTTGTAAAGAATGTCCACATTTTTTCCAAGATGGGTGATTCCAAGATGGGTGATACGATCTTAGATGCCATTTGTGAGAGACTAAGACAAAAAACATACATCAAAGGAAGCAAAATTTTATGTGATGGAGGTCTAATTGAGAAGATGGTTTTTATTGTGCGCGGGAAGATGTTGAGCAATGGAGTTGCAACTCCCTTAGGTGAAGGGGATGTTTGTGGCGAGGAACTTCTTGCTTGGTGTATTGAGAATTCTTCAGTGAACAAAGATGGTAAAAAAATCAGGTTTCCAGGACAGCGATTGCTGAGCAACAGGGATGTAGAGTGTTTAACAAATGTAGAAGCATTTATTCTCCGAGCTGCAGATATTGAAGAAGTCACGGGTATTTTCTCAAGATTTTTGCGGAATCCAAAGGTTCAAGGAGCCATAAGGTATCAATCCCCTTACTGGAGAACTTTTGCAGCAACCCGGATTCAAGTAGCATGGAGATACAGGAAGAAGTGTCTGAGCCGTGCAGACACATCCAATACTCAGTTCAACCACTTGTAG 606 0.4109 MLMENLPEDLQREIRRHLFKFVKNVHIFSKMGDSKMGDTILDAICERLRQKTYIKGSKILCDGGLIEKMVFIVRGKMLSNGVATPLGEGDVCGEELLAWCIENSSVNKDGKKIRFPGQRLLSNRDVECLTNVEAFILRAADIEEVTGIFSRFLRNPKVQGAIRYQSPYWRTFAATRIQVAWRYRKKCLSRADTSNTQFNHL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1133 201 SUPERFAMILY cAMP-binding domain-like 16 154 IPR018490 -
Vvi17g1133 201 CDD CAP_ED 34 145 IPR000595 -
Vvi17g1133 201 Gene3D Jelly Rolls 25 151 IPR014710 -
Vvi17g1133 201 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1133 Vvi-Chr17 16330339 16349069 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1133 1 108 Ion Channels AT3G17700 63.063 4.96e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1133 K05391 - vvi:100246030 409.068