Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1130 ATGGAGTACGGCTCAGGCGGAGGCGGCGGTGGTTCCGGTGGCTCAGGTGGGGACCCCGATGGCTCGGACTCCAGGAGGAAGAAGCGGTACCATCGCCACACTGCCCATCAGATTCAGAGACTTGAAGGGATGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAGAGGCTGCAGTTGAGCAGAGAGTTGGCTTTGGCTCCCAGGCAGATCAAATTTTGGTTTCAAAATAGGAGGACCCAGATGAAGGCCCAACACGAGAGAGCTGATAACTGTGCTCTTCGTGTGGAGAACGATAAGATCCGTTGTGAAAACATAGCCATTAGAGAGGCTCTCAAGAATGTGATTTGCCCGTCTTGTGGTGGCCCTCCAATTGGGGAGGATTCATATTTTGATGAACAGAAGTTGAGGGTTGAGAATGCCCAATTGAAAGAAGAGCTTGATAGAGTTTCTAGCATTGCTGCCAAGTACATAGGGCGGCCGATTTCACAGCTCCCACCAGTACAGCCTGTCCATATTTCTTCATTGGATTTGTCAATGGGAAGCTTTGGGGGGCAGGGGATGGGCAGTGGCCCTTCCCTTGATCTTGATCTTCTTCCTGGAAGTTCATCTGCTATGCCCATTTTGCCTTTCCAGGGGACTGGTATTTCAGATATGGATAAGTCCCTCATGGCAGATGTTGCTGGCAATGCATTGGATGAATTGCTTAGGCTTTTGCAGACCAACGAACCCTTGTGGATGAAGTCCACCACTGATGGGAGGGATGTTCTTAATCTTGAAAGCTATGAGAGGATTTTTCCTCGGGCTAATAGTCACTTGAAAAACCCTAATGTGAGGATTGAGGCATCAAGAGATTCAGGTGTTGTGATCATGAACAGTTTGGCATTGGTTGACATATTTATGGACTCGAACAAATGGATGGAGCTATTTCCGACAATTGTTTCAATGGCGAGAACACTTGAAGTATTATCATCCGGAATGATGGGTGGTCAGAGCGGTTCCCTTCAACTGATGTATGGAGAGCTGCAGGTGCTTTCATCCCTTGTACCTACTCGGGAATTCTATTTCCTCAGATATTGTCAACAAATTGAACAAGGCTCATGGGCAATAGTTGATGTTTCTTATGATTTCCCCCGAGACAACCAGTTTGCCCCTCAAAATCCATCTCATAGGCTTCCTTCTGGCTGCTTGATTCAAGATATGCCCAATGGATACTCCAAGGTTACTTGGGTGGAACATGTGGAAATCGAAGACAAAACCCCAACTCATCGGCTTTATAGAGATCTTATTCACAGAGGGTTAGCATTTGGAGCTGAACGGTGGCTGGCTACTCTACAGAGGATGTGCGAGAGATTTGCTTGTTTGATGGTTAAAGGAACTTCAACTCGGGATCTTGGAGGAGTGATTCCATCTCCTGATGGCAAGAGAAGCATGATGAAACTTGCCCAGAGGATGGTCAACAATTTCTGTGCAAGCATCAGCACCTCCAATGGACACCGATGGACAACACTCTCTGGGCTGAATGAGGTTGGAGTCCGGGTCACAATTCACAAGAACACTGATCCTGGCCAACCCAACGGTGTGGTTCTCAGTGCGGCTACCACCATCTGGCTCCCAGTTTCTCCACAAAATGTCTTCAATTTCTTCAGGGACGAAAGGACTCGGCCTCAGTGGGATGTTCTCTCCAATGGCAATGCCGTGCAAGAGGTTGCCCATATTGCAAATGGGCCACATCCTGGTAACTGCATATCTGTCCTGAGGGCCTTCAACACCAGTCAGAACAACATGCTGATACTCCAAGAGAGCTGCATAGACTCATCAGGTTCCCTAGTCATCTACTGCCCAGTTGATCTACCTGCCATCAACATAGCAATGAGCGGGGAGGACCCTTCCTACATACCCCTGCTGCCATCGGGTTTCACCATCTCACCAGATGGGCGACTAGACCAAGGGGACGGGGCGTCAAGCAGCTCCAGTACAACAGCGAGCATGGGGAGGTCAGGAGGGTCACTTATTACAGTGGTGTTTCAGATACTAGTGAGCAGCTTGCCATCCGCTAAGCTGAACTTGGAGTCGGTGACGACTGTTAATAACCTCATCGGTAACACTGTCCAGCAAATAAAGGCTGCCTTGAATTGCCCTAGTTCCTGA 2148 0.4884 MEYGSGGGGGGSGGSGGDPDGSDSRRKKRYHRHTAHQIQRLEGMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERADNCALRVENDKIRCENIAIREALKNVICPSCGGPPIGEDSYFDEQKLRVENAQLKEELDRVSSIAAKYIGRPISQLPPVQPVHISSLDLSMGSFGGQGMGSGPSLDLDLLPGSSSAMPILPFQGTGISDMDKSLMADVAGNALDELLRLLQTNEPLWMKSTTDGRDVLNLESYERIFPRANSHLKNPNVRIEASRDSGVVIMNSLALVDIFMDSNKWMELFPTIVSMARTLEVLSSGMMGGQSGSLQLMYGELQVLSSLVPTREFYFLRYCQQIEQGSWAIVDVSYDFPRDNQFAPQNPSHRLPSGCLIQDMPNGYSKVTWVEHVEIEDKTPTHRLYRDLIHRGLAFGAERWLATLQRMCERFACLMVKGTSTRDLGGVIPSPDGKRSMMKLAQRMVNNFCASISTSNGHRWTTLSGLNEVGVRVTIHKNTDPGQPNGVVLSAATTIWLPVSPQNVFNFFRDERTRPQWDVLSNGNAVQEVAHIANGPHPGNCISVLRAFNTSQNNMLILQESCIDSSGSLVIYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGRLDQGDGASSSSSTTASMGRSGGSLITVVFQILVSSLPSAKLNLESVTTVNNLIGNTVQQIKAALNCPSS* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1130 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 711 IPR042160 -
Vvi17g1130 715 ProSiteProfiles START domain profile. 216 453 IPR002913 GO:0008289
Vvi17g1130 715 Coils Coil 132 152 - -
Vvi17g1130 715 FunFam Homeobox-leucine zipper protein GLABRA 2 225 449 - -
Vvi17g1130 715 MobiDBLite consensus disorder prediction 645 665 - -
Vvi17g1130 715 CDD START_ArGLABRA2_like 220 449 - -
Vvi17g1130 715 SMART HOX_1 25 88 IPR001356 GO:0003677
Vvi17g1130 715 SMART START_1 225 450 IPR002913 GO:0008289
Vvi17g1130 715 SUPERFAMILY Homeodomain-like 19 87 IPR009057 -
Vvi17g1130 715 MobiDBLite consensus disorder prediction 1 33 - -
Vvi17g1130 715 Pfam Homeodomain 27 82 IPR001356 GO:0003677
Vvi17g1130 715 Gene3D - 225 450 IPR023393 -
Vvi17g1130 715 MobiDBLite consensus disorder prediction 649 665 - -
Vvi17g1130 715 CDD homeodomain 26 85 IPR001356 GO:0003677
Vvi17g1130 715 FunFam Homeobox-leucine zipper protein HDG1 15 100 - -
Vvi17g1130 715 Pfam START domain 226 450 IPR002913 GO:0008289
Vvi17g1130 715 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981|GO:0006355
Vvi17g1130 715 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Vvi17g1130 715 SUPERFAMILY Bet v1-like 217 451 - -
Vvi17g1130 715 Gene3D - 18 95 - -
Vvi17g1130 715 SUPERFAMILY Bet v1-like 471 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1130 Vvi-Chr17 16227507 16230509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1130 25 715 Homeobox Transcription Factor Family AT1G73360 68.481 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi17g1130 START 1.5e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1130 K09338 - vvi:100251182 1370.14