Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1129 ATGGAAGCAGCAGCACTCATAATTTGCCTCCCAATTTCCTCATCGCCATTTTCAACTCAAACATACAAACGAAAAACCCTTTATCCAATAAGTCTTCATCATCCGCCTCATCTTCGTACCTGCTCTGCACCTTCTTTGTCTTCTTGGGGGCCATTCAACCGACCCAGAAATGGAAATGACCTTTTTGCGGTGGCCTGCCTGCCTTCTTCTCCAAACCAACCTTCCATTCCAAAAACCAGGCTCTATGTCAGTGGGCTGTCATTCCGCACCACTGAAGAGAGCTTGAGAAATGCTTTTGAAACCTTTGGCCAACTTGTAGAGGTTAATCTTGTGATGGATAAAATAGCAAATAGACCAAGAGGCTTTGCTTTCCTTCGTTATTCCACTGAAGAGGAATCTGAGAAAGCCATTGAGGGAATGCATGGAAAGTTTTTGGATGGCAGGGTGATATTTGTGGAAGTTGCGAAACCCAGATCAGAGCTCCGCCAAAACCAGAACCAAAGACGATACTAA 513 0.4483 MEAAALIICLPISSSPFSTQTYKRKTLYPISLHHPPHLRTCSAPSLSSWGPFNRPRNGNDLFAVACLPSSPNQPSIPKTRLYVSGLSFRTTEESLRNAFETFGQLVEVNLVMDKIANRPRGFAFLRYSTEEESEKAIEGMHGKFLDGRVIFVEVAKPRSELRQNQNQRRY* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1129 170 SUPERFAMILY RNA-binding domain, RBD 69 168 IPR035979 GO:0003676
Vvi17g1129 170 PANTHER NUCLEOLAR PROTEIN 8 65 168 - -
Vvi17g1129 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 157 IPR000504 GO:0003723
Vvi17g1129 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 150 IPR000504 GO:0003723
Vvi17g1129 170 FunFam - 41 161 - -
Vvi17g1129 170 SMART rrm2_1 80 153 IPR003954 GO:0003676
Vvi17g1129 170 Gene3D - 68 170 IPR012677 -
Vvi17g1129 170 SMART rrm1_1 80 153 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1129 Vvi-Chr17 16178905 16197182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1129 79 170 Eukaryotic Initiation Factors Gene Family AT4G34110 29.348 8.05e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1129 - K13195 vvi:100246039 346.28