Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1127 ATGGCGCCAGTCGGATTACCTCCAGGTTTTAGGTTTCATCCCACTGATGAAGAGCTTGTGAATTACTATCTCAAGAGGAAGATTCATGGACAAGAGATTGAACTTGATATCATTCCTGAGGTCGATCTCTACAAATGTGAGCCTTGGGAGTTGGCAGAGAAGTCATTTTTGCCTAGTAGAGATCCAGAGTGGTACTTCTTTGGACCACGGGATCGAAAATACCCTAACGGGTTCAGGACTAATAGGGCAACCCGGGCGGGATACTGGAAATCCACAGGAAAAGACCGGAGAGTAACATGCCAAAGTCGCGCCATTGGAATGAAGAAAACACTGGTTTACTACCGTGGCCGTGCTCCTCAGGGGATTAGGACGGATTGGGTGATGCATGAGTACCGCCTTGATGACAAGGAATGTGAAGAAACGTCCGGAATTCAGGATTCCTACGCATTGTGTCGGGTGTTCAAGAAAAACGGGATATGCTCGGAGAGTGAAGAGCAAGGACAATGTAGCTCGTCATTGATAGAGAGCTCACAAGGCGTCCTCAATGACTACGAGACCATGTCGCCGGACGTTCCCCTACCATCCTCTTCATGCATGGAGGAGGAAGACAAAGATGACTCATGGATGCAGTTCATAACCGACGATGCATGGTGTTCTTCCAACACGATCATGGGTGGCGCCGATGAAGTCTCGTGCCCGCCTGCATTCACAAACTGA 717 0.4909 MAPVGLPPGFRFHPTDEELVNYYLKRKIHGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTCQSRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEETSGIQDSYALCRVFKKNGICSESEEQGQCSSSLIESSQGVLNDYETMSPDVPLPSSSCMEEEDKDDSWMQFITDDAWCSSNTIMGGADEVSCPPAFTN* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1127 238 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 187 - -
Vvi17g1127 238 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Vvi17g1127 238 FunFam Nac domain-containing protein 86 15 159 - -
Vvi17g1127 238 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Vvi17g1127 238 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Vvi17g1127 238 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1127 Vvi-Chr17 16114377 16117505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1127 1 230 NAC Transcription Factor Family AT3G17730 76.829 4.68e-133 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi17g1127 NAM 4.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1127 - - vvi:100266514 494.582