Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi17g1120 ATGGTTAGGAAGAGGAGAACTGAACTTCCCACTGCCAGCAGTGGGGAGAGCTCGGAGTCCACTCAGGAAGCTAGTGGAGCTAGTGGAGGTAGTGGAGGAGGCCGAGGTTCTCAGCAGCCTGCAGCAACACCACAACAAGGAGCTACTGGGATGGGATTTCAAGGGGGTAGAGGTTGGGCTCCTCAATCACAACAAAGCGGGCGCGGTGGGTATGCAGGTGGCCGGGGTCCTCAGCGTGGTGGAATGGCTCCACAACAGCAATACACTGTCCCGACTGAATATCAAGGTCGGGGTCGTGGAGGAGGAGCACCACCTCAGCAACCTCCTGCAGCAGCTGCTGCTTATGAGTCTGGAAGCAGAAGCCGAGCTCGTGTGGGTGGTGGCCGTGGGGTAGAGCCAGTGTCTTCTGGTGGCCCTCCTTCTAAGCCGTTAAGTTCCGATCTGCACCAAGCTACGCAGGCGAGTTATGCAGCCGGGGGAACTCCTCATCGCGTTCCCTCTGAAGCCAGTTCATCACGTCAGGCTGCTGAGTCTTTGACACAGCAGCTACAGAAGGTTTCTATCCAGCAGGAGGTGCCTCCCAGCCAGGCAATTCAGCCTGTCGCTCCCTCCAGCAAATCAATGAGGTTTCCTCTTCGACCAGGCAAGGGAGTTACTGGTAAGAAGTGTATAGTCAAGGCTAATCACTTCTTTGCTGAACTTCCAGATAAAGATTTACACCAGTATGATGTGTCAATTAATCCGGAGGTTACATCAAGGGGGGTGAACCGTGCTGTGATGGAACAGCTGGTGAAATTGTACCGGGAGTCACATCTTGGAAAGCGACTCCCTGCCTACGATGGAAGGAAAAGTCTGTATACTGCTGGGCCGCTTCCTTTCATTTCAAAAGAGTTTATGATAACTCTCATAGATGAAGATGATGGAACAGGCGCCCCCAGGAGAGAGAGGGAATTCAAAGTTGTGATCAAACTGGCTGCACGTGCTGATCTACACCATTTAGGACTGTTCTTACAGGGGAGGCAAGCTGATGCTCCCCAAGAAGCTCTTCAGGTTCTTGACATTGTTTTGCGCGAGTTGCCTACAACTAGGTACTGTCCCGTGGGGCGATCATTTTATTCTCCTGATCTAGGGAGAAGGCAGCCATTGGGTGAGGGTTTGGAAAGTTGGCGTGGTTTCTATCAGAGTATTCGGCCAACTCAGATGGGACTGTCACTGAATATTGATATGTCCTCGACTGCTTTTATTGAGCCATTGCCTGTCATTGATTTTGTGACACAGCTTCTGAATCGGGATGTTTCTTCCCGACCATTATCTGATGCTGATCGTGTAAAGATTAAGAAGGCTCTCAGAGGAGTCAAAGTTGAAGTTACTCATCGGGGAAATATGCGCAGAAAATATCGTATATCTGGCTTAACATCACAAGCAACACGTGAATTGACTTTTCCTGTTGATGATAGAGGAACCATGAAATCTGTCGTTGAGTACTTCTATGAAACATATGGGTTTGTCATTCAGCATTCTCAATGGCCTTGTCTGCAAGTGGGAAATCAACAGAGGCCAAATTATTTGCCTATGGAGGTTTGCAAGATTGTTGAAGGCCAAAGATATTCCAAGAGGTTGAATGAGAGGCAGATTACTGCTTTACTGAAGGTGACTTGTCAGCGTCCTCAAGAAAGGGAGCATGACATAATGCAGACGGTTCACCATAATGCTTATCATGAGGATCCTTATGCTAAGGAGTTTGGTATCAAAATCAGTGAGAAGCTCGCTTCAGTTGAAGCTCGCATTTTACCTGCTCCATGGCTTAAATACCATGATACGGGAAGGGAAAAGGATTGTCTGCCTCAAGTTGGCCAGTGGAATATGATGAATAAGAAAATGGTCAATGGTGGAACTGTCAACAATTGGATTTGCATAAATTTTTCACGTGGAGTACAAGAGAGTGTGGCTCGTGGGTTCTGTCAGGAGCTTGCACAAATGTGTTATATTTCTGGCATGGCATTTAATCCGGAACCAGTACTTCCACCAATTACTGCACGTCCTGATCAGGTGGAGAGAGTTTTGAAGGCAAGGTTTCATGAAGCCATGACCAAACTCCAGCCACAGGGCAAGGAGCTTGATTTGCTTATTGTTATTTTGCCAGATAATAATGGTTCACTCTATGGTGATTTGAAACGAATCTGTGAGACAGATCTTGGGCTTGTTTCACAGTGTTGCTTACATAAACATGTGTATAGAATGAGTAAGCAATATCTGGCAAATGTGGCATTGAAGATTAATGTAAAGGTTGGAGGGAGAAATACGGTGCTTGTTGATGCAATATCAAGGCGCATACCTCTGGTCAGTGATCGGCCTACTATCATTTTTGGGGCTGATGTTACCCATCCTCACCCAGGAGAGGATTCAAGCCCATCTATTGCTGCTGTTGTCGCCTCTCAAGATTGGCCCGAGATTACAAAATATGCTGGTTTGGTTTGTGCTCAGGCCCATCGACAGGAGCTCATCCAAGATCTTTATAAGACTTGGCAGGATCCTGTAAGAGGAACTGTGTCTGGTGGAATGATCAAAGAACTGCTTATATCTTTCCGTAGAGCAACTGGGCAGAAACCTCAGCGCATAATATTCTATAGGGATGGGGTCAGTGAAGGGCAGTTCTATCAAGTCTTACTATATGAACTTGATGCTATTCGTAAGGCATGTGCATCTTTGGAGCCAAACTATCAGCCTCCTGTGACATTTGTTGTGGTTCAGAAACGCCATCATACTAGATTGTTTGCGAACAACCATAATGACCGGAATGCAGTTGACAAGAGTGGGAATATATTACCTGGTACTGTTGTAGATTCTAAGATCTGCCATCCTACTGAGTTTGACTTTTACCTGTGCAGCCATGCTGGCATTCAGGGCACAAGCCGACCTGCCCATTACCATGTGTTGTGGGATGAAAACAAGTTCACAGCTGATGGGCTGCAGTCCCTCACAAACAACCTCTGCTACACATATGCTAGGTGCACACGCTCTGTTTCCATCGTGCCCCCTGCATACTATGCTCATCTGGCTGCTTTCCGAGCACGCTTCTATATGGAGCCAGAGACATCAGATAGTGGGTCAATGACAAGCGGTGCTGCTGCTGGTCGTGGGGGCATGGGTGTTGGAGGACCAGGTCCTCGAAGCACACGGGTATCAGGTGCTAATGCAGCCGTTAGACCCCTCCCGGCCCTCAAGGAGAATGTCAAGAGGGTCATGTTTTACTGTTAG 3258 0.4779 MVRKRRTELPTASSGESSESTQEASGASGGSGGGRGSQQPAATPQQGATGMGFQGGRGWAPQSQQSGRGGYAGGRGPQRGGMAPQQQYTVPTEYQGRGRGGGAPPQQPPAAAAAYESGSRSRARVGGGRGVEPVSSGGPPSKPLSSDLHQATQASYAAGGTPHRVPSEASSSRQAAESLTQQLQKVSIQQEVPPSQAIQPVAPSSKSMRFPLRPGKGVTGKKCIVKANHFFAELPDKDLHQYDVSINPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFMITLIDEDDGTGAPRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDDRGTMKSVVEYFYETYGFVIQHSQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQEREHDIMQTVHHNAYHEDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRGVQESVARGFCQELAQMCYISGMAFNPEPVLPPITARPDQVERVLKARFHEAMTKLQPQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLHKHVYRMSKQYLANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDRNAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAAAGRGGMGVGGPGPRSTRVSGANAAVRPLPALKENVKRVMFYC* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi17g1120 1085 Gene3D - 777 1085 IPR036397 GO:0003676
Vvi17g1120 1085 MobiDBLite consensus disorder prediction 1 212 - -
Vvi17g1120 1085 Pfam Glycine-rich region of argonaut 91 201 IPR024357 -
Vvi17g1120 1085 FunFam protein argonaute 10-like 777 1085 - -
Vvi17g1120 1085 MobiDBLite consensus disorder prediction 1037 1064 - -
Vvi17g1120 1085 SMART DUF1785_2 365 417 IPR014811 -
Vvi17g1120 1085 MobiDBLite consensus disorder prediction 11 50 - -
Vvi17g1120 1085 SMART Piwi_a_2 708 1029 IPR003165 GO:0003676
Vvi17g1120 1085 Pfam Piwi domain 709 1028 IPR003165 GO:0003676
Vvi17g1120 1085 Pfam Mid domain of argonaute 615 689 IPR032473 -
Vvi17g1120 1085 Gene3D paz domain 411 536 - -
Vvi17g1120 1085 MobiDBLite consensus disorder prediction 139 157 - -
Vvi17g1120 1085 CDD Piwi_ago-like 576 1028 IPR045246 -
Vvi17g1120 1085 Pfam Argonaute linker 1 domain 366 416 IPR014811 -
Vvi17g1120 1085 CDD PAZ_argonaute_like 417 531 - -
Vvi17g1120 1085 ProSiteProfiles Piwi domain profile. 708 1029 IPR003165 GO:0003676
Vvi17g1120 1085 SUPERFAMILY Ribonuclease H-like 703 1029 IPR012337 -
Vvi17g1120 1085 ProSiteProfiles PAZ domain profile. 418 532 IPR003100 GO:0005515
Vvi17g1120 1085 SUPERFAMILY PAZ domain 224 570 IPR036085 GO:0005515
Vvi17g1120 1085 MobiDBLite consensus disorder prediction 165 203 - -
Vvi17g1120 1085 Gene3D - 596 771 - -
Vvi17g1120 1085 FunFam Protein argonaute-2 411 537 - -
Vvi17g1120 1085 FunFam Argonaute 10 596 771 - -
Vvi17g1120 1085 Pfam N-terminal domain of argonaute 221 356 IPR032474 -
Vvi17g1120 1085 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 199 1030 - -
Vvi17g1120 1085 SMART PAZ_2_a_3 422 554 IPR003100 GO:0005515
Vvi17g1120 1085 Pfam PAZ domain 422 547 IPR003100 GO:0005515
Vvi17g1120 1085 Pfam Argonaute linker 2 domain 558 604 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi17g1120 Vvi-Chr17 15920351 15927948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi17g1120 93 1085 Eukaryotic Initiation Factors Gene Family AT1G48410 78.794 0.0 1617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi17g1120 K11593 - vvi:100256320 2003.02